SimpleSearch - Line and FST details


Line specific information

 
Line ID 918D02
Vector Used pAC161
Line Availability available as T3 set from NASC (N488070)
Segregation Analysis 50:50:50
Confirmed for Hit At2g20050
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At3g15605

 
Sequence (A. th genome BLAST matches underlined) 
>12-K030989-022-918-D02-8409
CATGTGAAATATTCACCACAGGGTCTTGAACATAAAATCTGAGCACTTGAGTCGAAAAAC
CACCCTAGAATCGCCTGGAGGTCGTAAACTTCAATCTACCAAGCGTATTTTAATTTTACT
TCTGACAGTAGATGTCGGGAGAAATGACACCAGCTTCACGATTGAAGTCACACATTGACC
ATGTATACTATCCTCCACATAGGGAGGGGAACCACCCTATAGTGAGTCGTAATACCCCTA
CTCACTTGACAATCGCCCAACTCACTTCCAAGTATTTCAACTCAGGTATGGGATCCTCCC
TATAGTGAG
GenBank Accession FR817888 [GenBank]
Graphic View Graphic view of gene At3g15605
Predicted Position of Insertion Chr3:5288619 - go to primer design
BLAST e Value 0.004
Hit Clone Code (BAC ID) MQD17
Hit Gene Code At3g15605 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation nucleic acid binding protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At2g20050

 
Sequence (A. th genome BLAST matches underlined) 
>12-K030990-022-918-D02-8409
CTGTTGATGTCGGGAAAATGTGACACGCTTCACGATTGAAGTCACGCATTGACCATGTAG
GATATCCCACCTCTCGGGAGGCCAACTCCTCAATACCTGGTAATAATTCTTACTCTACAT
CAATCTTAAAACGGTGCTCCTCAACTTACACTATTTTGGTTTACCCGGGAATGGACAACA
TGCTTGAGTATGGGATCCTCCCTATAGTGAGGCNNAANGNNGGGANGCGCNTAGAAGAGG
GTCTCACTATAGGGAGGATCCCA
GenBank Accession CT027348 [GenBank]
Graphic View Graphic view of gene At2g20050
Predicted Position of Insertion Chr2:8651348 - go to primer design
BLAST e Value 2e-35
Hit Clone Code (BAC ID) T2G17
Hit Gene Code At2g20050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37