SimpleSearch - Line and FST details
Line specific information
Line ID | 918D02 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N488070) |
Segregation Analysis | 50:50:50 |
Confirmed for Hit | At2g20050 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At3g15605
Sequence (A. th genome BLAST matches underlined) | >12-K030989-022-918-D02-8409 CATGTGAAATATTCACCACAGGGTCTTGAACATAAAATCTGAGCACTTGAGTCGAAAAAC CACCCTAGAATCGCCTGGAGGTCGTAAACTTCAATCTACCAAGCGTATTTTAATTTTACT TCTGACAGTAGATGTCGGGAGAAATGACACCAGCTTCACGATTGAAGTCACACATTGACC ATGTATACTATCCTCCACATAGGGAGGGGAACCACCCTATAGTGAGTCGTAATACCCCTA CTCACTTGACAATCGCCCAACTCACTTCCAAGTATTTCAACTCAGGTATGGGATCCTCCC TATAGTGAG |
GenBank Accession | FR817888 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:5288619 - go to primer design |
BLAST e Value | 0.004 |
Hit Clone Code (BAC ID) | MQD17 |
Hit Gene Code | At3g15605 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | nucleic acid binding protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | unknown |
Gene hit At2g20050
Sequence (A. th genome BLAST matches underlined) | >12-K030990-022-918-D02-8409 CTGTTGATGTCGGGAAAATGTGACACGCTTCACGATTGAAGTCACGCATTGACCATGTAG GATATCCCACCTCTCGGGAGGCCAACTCCTCAATACCTGGTAATAATTCTTACTCTACAT CAATCTTAAAACGGTGCTCCTCAACTTACACTATTTTGGTTTACCCGGGAATGGACAACA TGCTTGAGTATGGGATCCTCCCTATAGTGAGGCNNAANGNNGGGANGCGCNTAGAAGAGG GTCTCACTATAGGGAGGATCCCA |
GenBank Accession | CT027348 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:8651348 - go to primer design |
BLAST e Value | 2e-35 |
Hit Clone Code (BAC ID) | T2G17 |
Hit Gene Code | At2g20050 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |