DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_059944c
Line Availability available from NASC (N655555) and ABRC (SALK_059944c)
Confirmed for Hit At1g75060
Parent of DUPLO pair 12234
Parent of pair(s) none

Gene hit At1g62300

 
Sequence (A. th genome BLAST matches underlined) 
CGCAATGTGCTATTTGTTAAAAAAATTCTTGGGAGTTTTACGTCAGATCCTGCGTCATTG
CCCGGTTACGACCCGACCCATAATACACCGGGATTCTAAGCCCGTTTCATTTTCATGGAA
ATTCACACACACACACACACATAAAAACTTCATTTGCTATTGGGTAACGGGTTGACGAAA
AGGAAAAATGAAACAAAACATTGTACTATTATTAGAAATTTTTAACAAACAATTGGGCAA
TCCTTTCAAAGCTAATAGAGAGTACACCGTTTGGGATTTATGATTAGTTTTTAGGTTATA
TATAAATTTGGNTTTTTTTATCACCAGGTATGATTCNGGTNANGGTGTANTTTTCNTANT
TTTTATANAATATATCANTATNTTTTANNANNNNNNNNNNNNNNNANNANNNNTTNNNTA
TANNANNNAAAA
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At1g62300
Predicted Position of Insertion Chr1:23019401 - go to primer design
BLAST e Value 1e-117
Hit Clone Code (BAC ID) F19K23
Hit Gene Code At1g62300 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation WRKY family transcription factor
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At1g75060

 
Sequence (A. th genome BLAST matches underlined) 
ACTTTGTTTGGGGAGTTCAATTTTTAACCTTTGCCCTTTTTGCTTTAAATTTTCAGGTTT
TGACTAAGGGAATTAAAGTGAATTTGCAAAGGAATGCCCTTAGGGTTCTTGAACATCCTA
CAGGGAACAAAAAAAACAATGATCTTGAAGTCAACCATTCTACACAGTGAAATCATCCCC
CCAATATGAGAAAGTTTGGTTCCTTGTCTCTGCAATAAAGTACCAAATTTTAGTCTTTTT
GAAATGTTTCATAAAGACCGTTCT
GenBank Accession CC179240 [GenBank]
Graphic View Graphic view of gene At1g75060
Predicted Position of Insertion Chr1:28182331 - go to primer design
BLAST e Value 2e-70
Hit Clone Code (BAC ID) F9E10
Hit Gene Code At1g75060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation histone deacetylase complex subunit
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on Thursday, 10 June 2021 13:37