SimpleSearch - Line and FST details
Line specific information
| Line ID | 119E08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411384) |
| Segregation Analysis | 50:48:46 |
| Confirmed for Hit | At3g06960 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g06960
| Sequence (A. th genome BLAST matches underlined) | >61-K012822-022-119-E08-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTGGAGGGTTCTCTCTTCATTATGCCATCATTTCATTTTTTCTG TTTGTTGGAGGGTTCTCTCTTCATTTTCCATCTGTAAATTCCGGATTCATGGCTGATGCC TTAGGGCGGGCATCACTCACAGCTCAATATGGAAACTTCCAGAAATTCTTCTTTGATCTC ACCCGTTTCCATGCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCCACGGGCAGGCG CGCANCACGATCGCAAAGTATTTGAACGCAGGTACAATCGAGCCGACGTTCACGGTACCG GGCCCCCCCTCGAGGTCGATCCAACCCCTCCGCTGCTATAGTGCAGACGACTTCTGACGT TCACAGCATCCGTCTTCTGAAAACGACCTGTCGGACAAGTCCTAAGTCACACTACAAGCT GGCGCCCTGCCCTTTTACCTGCCGTTTT |
| GenBank Accession | AL757211 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:2194983 - go to primer design |
| BLAST e Value | 1e-69 |
| Hit Clone Code (BAC ID) | F17A9 |
| Hit Gene Code | At3g06960 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | pigment defective 320 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g65920
| Sequence (A. th genome BLAST matches underlined) | >61-K012517-022-119-E08-8409 NTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACAATTGATTATATACTGCACTT GTATATTTCAGGTATACCTCACGTATGGGACTCTACCATATAGTGAGGTGTATTACCTGA GTCGGAGCGAATGTTACCATATGCTGCTGGACATGACAGAGCCTGCTGGATTAACGAAGC GCTTATGAACGAACCAACATGATCATGGACTATACCCCTGCTTACACACCTGAAGGCTCA ACGGTGACGTATACATAAGATTTTCAATATTAGGATAACGAAAAGCTATTCAATAGTCGA AAGAAACCAAGATATCGCATAAATTCCCATTTCCGTCACTATGGGATCCTCCCTCATAAG AGTCTTTCAACTCACTCTATCTGTGAAACTGAGTGGCACAAGACTCAGAATGAACTGTCC GCCACAGTTTCCGGATAGGATCCGTCTGAACACGGGCCATATGTGAGCATGCAGGGCCAT TGTCCATGGCCAGTAGTATACTGACAGTCATACAACATGTTCGTCGTTGGCTCTAAATTG GATTAAGCTATTAAGCACGATAAAGATTACATATTGAAATTAGATATTGATTTAGACGGG GATTCCATTATCTATCTCTCACGTTGGATGGCCTCTGCTGGAACCAAAAGATCACGATCG CAACTT |
| GenBank Accession | FR803409 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:26363984 - go to primer design |
| BLAST e Value | 6e-40 |
| Hit Clone Code (BAC ID) | K14B20 |
| Hit Gene Code | At5g65920 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ARM repeat superfamily protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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