SimpleSearch - Line and FST details
Line specific information
Line ID | 004G05 |
Vector Used | pAC106 |
Line Availability | available as T3 set from NASC (N400365) |
Segregation Analysis | 50:44:42 |
Confirmed for Hit | At3g06330 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At4g05133
Sequence (A. th genome BLAST matches underlined) | >39-K014807-022-004-G05-8409 TTGATCCATGTAGATTTCCCGGAATGAAGCCTTTACATTGAATTATCCTGTGCATCTAAC TGATGTTCACCGCGACTGTCTATAGCATATACGATTCTGTTTGTCTGGAGTATGGAAACC GGTAGGAGGACTAATGCTACTGCATCCCAACCTCTCCATACTGGACTAGATGCTTTATAC CTTCCTATAGAGGAAAGTGCTTATGATGATGATTGTCTA |
GenBank Accession | FR799858 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:2645905 - go to primer design |
BLAST e Value | 4e-04 |
Hit Clone Code (BAC ID) | C17L7 |
Hit Gene Code | At4g05133 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | |
Insertion Classification | TS2TE |
Confirmation Status | unknown |
Gene hit At3g06330
Sequence (A. th genome BLAST matches underlined) | >39-K014797-022-004-G05-8409 NTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGAATTTAAGCTTGAAAA AGAAAGTTATTTCTCAACCCGAAAGCGAGAGAAGCTCCTTACTATCTCCTGGTCTCATGG AAACCGCTAAAAAGCCTAATGCTACTGGTTCCACAACTTCTCCATATTGGAAAAGATGCT TATCGCTTCCTATGGGATCCTCCTATAAAGTGAG |
GenBank Accession | AL751523 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:1918190 - go to primer design |
BLAST e Value | 1e-78 |
Hit Clone Code (BAC ID) | F28L1 |
Hit Gene Code | At3g06330 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | RING/U-box superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |