SimpleSearch - Line and FST details
Line specific information
| Line ID | 011F01 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N401021) |
| Segregation Analysis | 50:44:42 |
| Confirmed for Hit | F26P21 At5g05180 At3g56580 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit F26P21
| Sequence (A. th genome BLAST matches underlined) | >06-K012257-022-011-F01-8409 AATTCGATCCATGTAGATCTTCCCGTACATGAANGCCTTTACAATTGAATATATTCTAAC TTGACACTAATTAAATTACTTCTATTAATCACATGCCACGTAATTATAAATTGAGCGAAT AATGAACTCAAAAACTCTATAGTTCAACCACATTTGAGCTATGGGATCCTCCCTATAGTG AGTCGTATTACTCAAGCATNGGNGGGGGTTTTAGCGTGTTTCCAAAATCATACTTTTTGA AACACCGCTATATATTGCGAGGCATATATCATATTTGATACTGAATTAATGCCCGTGTGA TATCCTGGTTTGAAATCTCCTCTACCGAAGCTTTGGTAAAATTCAAAGCAAAGCAAGACA TGTAAATTTTTATGGGATCCTCCTTATAGTGAGTGGGATCTACTCACACATTATTATAGA GAGAGATACATTTGTAGAGAGAGACTGGTGATTTCAGCGGGCATGCCTGCAGGTCGACCT GCAGCCAAGCTACAAAATTGGTATATGTTCGGTTTACGTTATTTTCGAGAGAAAATTGAA TCGAACCGAACCCAATAATTAATAGGTAAAACTTTGATAACTGGTGGGGCATGTGGTAGA TGTTTGGCCACTA |
| GenBank Accession | AL752244 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:15944212 - go to primer design |
| BLAST e Value | 5e-62 |
| Hit Clone Code (BAC ID) | F26P21 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL752244 [GenBank] |
Gene hit At4g32640
| Sequence (A. th genome BLAST matches underlined) | >06-K013046-022-011-F01-35St AACGCATTCCAACTGACATTGATCTACCATCGGCCATTGGATCCTCTTTACATTCTTCCA CTAGTAAAGACCCGCCTGCCTCGTGTGCCTACTCAGCTGTTGTTGACATCATTGACACAC ATGTCTGCATGTGGTC |
| GenBank Accession | AL752246 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:15747868 - go to primer design |
| BLAST e Value | 1e-10 |
| Hit Clone Code (BAC ID) | F4D11 |
| Hit Gene Code | At4g32640 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Sec23/Sec24 protein transport family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At5g05180
| Sequence (A. th genome BLAST matches underlined) | >06-K012256-022-011-F01-8409 ATTCGATCCATGTAGATTTCCCTGACTGAAGTCCTTTACAATTGAATATAGTTCTAACTG ACACTTAATATAAATTATTCTTTCATACATGCCATCGTAATATAAATTGAGCCGATTAAT GAACTCAGAAACTCTATAGTTAACCACATTTGAGCTATGGGATCCTCCCTATAGTGAGTC GTATTACTCAAACATTGGNTGGGGTTTTAGAGTGTCTTCAAAATAATACTATTTGAAACA ACTCTATATATCGCAAGGCATATATCATATTTGATACTGAATTAATGCCCGTGTGATATC CTGGTTTGAAATCTCCTCTACCGAACCTTTGGTAAAATTAAAAGCAAAGCAAGACATGTA AATCTTTATGGAATCCTCCCTATATTGAGTGGATCTACTCACACATTATTATAGAGAGAG ATAGATTTGTAGAGAGAGACTGGTGATTTCAGCGGGCATGCCTGCAGGTCGACCTGCAGC CAAGCTACAAAATTGGTATATGTTCGGTTTACGTTATTTACGAGAGAAAATTGAATCGAA CCGAACCCAATAATTAATAGGTCAAACTTTGATAACTGGTGGTGCATGTGGAGATGTGTG GCCACTATGGGATCCTCCCTATAGTGAGTCGAATTAC |
| GenBank Accession | AL752243 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:1535520 - go to primer design |
| BLAST e Value | 5e-62 |
| Hit Clone Code (BAC ID) | K2A11 |
| Hit Gene Code | At5g05180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cellulose synthase family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g56580
| Sequence (A. th genome BLAST matches underlined) | >06-K012257-022-011-F01-8409 AATTCGATCCATGTAGATCTTCCCGTACATGAANGCCTTTACAATTGAATATATTCTAAC TTGACACTAATTAAATTACTTCTATTAATCACATGCCACGTAATTATAAATTGAGCGAAT AATGAACTCAAAAACTCTATAGTTCAACCACATTTGAGCTATGGGATCCTCCCTATAGTG AGTCGTATTACTCAAGCATNGGNGGGGGTTTTAGCGTGTTTCCAAAATCATACTTTTTGA AACACCGCTATATATTGCGAGGCATATATCATATTTGATACTGAATTAATGCCCGTGTGA TATCCTGGTTTGAAATCTCCTCTACCGAAGCTTTGGTAAAATTCAAAGCAAAGCAAGACA TGTAAATTTTTATGGGATCCTCCTTATAGTGAGTGGGATCTACTCACACATTATTATAGA GAGAGATACATTTGTAGAGAGAGACTGGTGATTTCAGCGGGCATGCCTGCAGGTCGACCT GCAGCCAAGCTACAAAATTGGTATATGTTCGGTTTACGTTATTTTCGAGAGAAAATTGAA TCGAACCGAACCCAATAATTAATAGGTAAAACTTTGATAACTGGTGGGGCATGTGGTAGA TGTTTGGCCACTA |
| GenBank Accession | AL752244 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:20962189 - go to primer design |
| BLAST e Value | 1e-13 |
| Hit Clone Code (BAC ID) | T5P19 |
| Hit Gene Code | At3g56580 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL752245 [GenBank] AL752243 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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