SimpleSearch - Line and FST details


Line specific information

 
Line ID 018G04
Vector Used pAC106
Line Availability line died - no seeds available
Segregation Analysis unknown
Parent of DUPLO pair none
Parent of pair(s) 3386, 3570, 89640, 89641
Note

Gene hit At3g22520

 
Sequence (A. th genome BLAST matches underlined)
>31-K013476-022-018-G04-8409
AAGGATTGGGCCGATTCTATCAATTCCTCGACTGATATGGAGCACAGTGAGCACATCCTC
CCGTGTAGGTCTACTATAAGGGGCCGATGCTCGATTGAGACCAAGCTCTGGGATCGCCCA
GTAAACGAGGGGATTATCCTGTGTCTGAAGCTTTGCTTTGATTCCTTGAACGACTCAGAC
CGTTAGATGGGTCTACGACCGGAGCTGATACCAAACCAGCGATGACGTGATCGGTGTTCA
AAATCCTGACCTCAGCACAAGAGGTGCTGGCGTCTACATGAGAGAAGATTAAATCGCCGA
GAGGAACATTAGAGACTTTGACAATTGAGCGAAACGTACGTTGGCTAAAAGGGAGGGGGC
TCTTATCCTAATTGCTGCTACCATAAAAGATGCGCCTTTAGGGTTTAGAACGCTCCATAT
TTGGGTATTCAATTAGCCTGAGTA
GenBank Accession FR800555 [GenBank]
Graphic View Graphic view of gene At3g22520
Predicted Position of Insertion Chr3:7974819 - go to primer design
BLAST e Value 2e-18
Hit Clone Code (BAC ID) F16J14
Hit Gene Code At3g22520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation spindle assembly abnormal protein
Insertion Classification TS2TE (5')
Confirmation Status failed, line belongs to a contamination group, please check line 017E03
Other FSTs Supporting this Hit FR800555 [GenBank]

Gene hit F24B9

 
Sequence (A. th genome BLAST matches underlined)
>31-K026162-022-018-G04-8409
CCATTTTCGAAGGGGGCAAAACTCTCCACCGCGAATAATCTAAAAAAACTAGATTTCTCA
ATAAACAAAAAAAAAGGGACGTTCAGGCAGGAACCCATCACGACTACCTTTTCATATACC
AAAACCATCAGGTAGGGGATCCCCCCTATAGGGGGACTAATTAATCTTTNAATTAAATAA
TTTTCCTATGGAAACCCCCAAATAAGGGCACCAATTATTTATCCCTCTAAAATAATCCCC
AAATTCATTATAATTTTAACATCATCCCTTAACTTACATTTAAAAAAAACCCTACCATAA
ATTTACATTTTACAAA
GenBank Accession FR800557 [GenBank]
Graphic View Graphic view of sequence FR800557 of line 018G04
Predicted Position of Insertion Chr1:2357894 - go to primer design
BLAST e Value 3e-37
Hit Clone Code (BAC ID) F24B9
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit FR800557 [GenBank]

Gene hit At1g01300

 
Sequence (A. th genome BLAST matches underlined)
>31-K013162-022-018-G04-8409
TGATCCATGTAGATTGCCCGGGCATGATAGCACTTTTCGAGTGGAGTTCCTCCCTATAGC
GAGTTGATATTACTATCTGATTAAACCGGTGACCGGTTTGACCGGGGAACGATAATTTAC
CTTTACCGAGTCCTAATAAACCGGCGGCTCCGACGAAGAGACCTTCGTTGTCGTGGCCAC
ATCCGAGAGCAACGCCTTTAACGCGATTTCGCCGGAAAGTTAGCGTTTCGGTGGAGAAAT
CGCCGACGGTGAAAGAACCATCTCCGTAAGAGACTTGGTATAGACAATTCTTACGACGGG
TGTTGCATCCGGCGGAGTCTAATCGGTGGCAGTGAGGTGAAGAACAGGGGATTGTGGCAT
AGGTCTTGGATTTTCTCGGGTCGAATATCGGGTGGGATTGTGAGTATCATGTCCGACAGG
GATCGCATTGTAGCCAGACGATGTCGCTGCCGGTGTCGAGCACCATGTAAACATATCTTG
CCGGAGTGCCGACACCGAGGCGCGTGAAGTATTCACCGCTTCCTTGAGAGAGACCATAGA
CGACTGAGCTGCTGAATCCACCGGGTCGTGGTGCGTGAGTCACGTTCCTTCCGGTGATTT
GAGCGGCGAGTGTGGTCCCCGATTCCCCGTGCGTCCACCCCCCTCGCAAACGTGCCCCCC
ACTGCGCGTTCTGTTCCCTCTTTCCCCGTT
GenBank Accession AL752978 [GenBank]
Graphic View Graphic view of gene At1g01300
Predicted Position of Insertion Chr1:117940 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F6F3
Hit Gene Code At1g01300 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Eukaryotic aspartyl protease family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g50830

 
Sequence (A. th genome BLAST matches underlined)
>90-K013933-022-018-G04-8409
TTTGATCCATGTAGATTTCCCGGACATGAAGTCCTTTACAATTGAAGAAACCATATTGAC
TATTCACTCTATTTTCATGTAGATTGTCGTCTCTAATGAATTTGCAGATAACTTTGATGT
CTAAATAACTGTATTGGTCACATGACTCATAACATCATTAATGTCTCCAAGATTATTTGT
TTAGTCAAGAAAAAACCCCGAAAAACGGAAAGTCTTTTGTGAGGGTTAATCTAAAGACTT
CTTGTTCTACATGAAATTGGATGGTTGCAAACTGATAATGTCTTAGTAATAATTAAGTCC
AATTAATTATGCATAAAATCATATTGTTAAATTATATTAAAATTGTGATGCTCCCTATCT
TGAGTATGGTGACACATGTCTTCGCTTCTACACCATCCATGCATATTGCATACATATTGC
TCATCAGCCTAAATTAATCAAATGGGATCCTCCCTATAGTGAGTCGTATTACTC
GenBank Accession AL752980 [GenBank]
Graphic View Graphic view of gene At5g50830
Predicted Position of Insertion Chr5:20683126 - go to primer design
BLAST e Value 4e-180
Hit Clone Code (BAC ID) K7B16
Hit Gene Code At5g50830 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation nuclear polyadenylated RNA-binding protein
Insertion Classification Promoter
Confirmation Status unknown


Last Updated on 10.06.2021 13:37