SimpleSearch - Line and FST details
Line specific information
| Line ID | 018G04 |
| Vector Used | pAC106 |
| Line Availability | line died - no seeds available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3386, 3570, 89640, 89641 |
| Note |
Gene hit At3g22520
| Sequence (A. th genome BLAST matches underlined) | >31-K013476-022-018-G04-8409 AAGGATTGGGCCGATTCTATCAATTCCTCGACTGATATGGAGCACAGTGAGCACATCCTC CCGTGTAGGTCTACTATAAGGGGCCGATGCTCGATTGAGACCAAGCTCTGGGATCGCCCA GTAAACGAGGGGATTATCCTGTGTCTGAAGCTTTGCTTTGATTCCTTGAACGACTCAGAC CGTTAGATGGGTCTACGACCGGAGCTGATACCAAACCAGCGATGACGTGATCGGTGTTCA AAATCCTGACCTCAGCACAAGAGGTGCTGGCGTCTACATGAGAGAAGATTAAATCGCCGA GAGGAACATTAGAGACTTTGACAATTGAGCGAAACGTACGTTGGCTAAAAGGGAGGGGGC TCTTATCCTAATTGCTGCTACCATAAAAGATGCGCCTTTAGGGTTTAGAACGCTCCATAT TTGGGTATTCAATTAGCCTGAGTA |
| GenBank Accession | FR800555 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:7974819 - go to primer design |
| BLAST e Value | 2e-18 |
| Hit Clone Code (BAC ID) | F16J14 |
| Hit Gene Code | At3g22520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | spindle assembly abnormal protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 017E03 |
| Other FSTs Supporting this Hit | FR800555 [GenBank] |
Gene hit F24B9
| Sequence (A. th genome BLAST matches underlined) | >31-K026162-022-018-G04-8409 CCATTTTCGAAGGGGGCAAAACTCTCCACCGCGAATAATCTAAAAAAACTAGATTTCTCA ATAAACAAAAAAAAAGGGACGTTCAGGCAGGAACCCATCACGACTACCTTTTCATATACC AAAACCATCAGGTAGGGGATCCCCCCTATAGGGGGACTAATTAATCTTTNAATTAAATAA TTTTCCTATGGAAACCCCCAAATAAGGGCACCAATTATTTATCCCTCTAAAATAATCCCC AAATTCATTATAATTTTAACATCATCCCTTAACTTACATTTAAAAAAAACCCTACCATAA ATTTACATTTTACAAA |
| GenBank Accession | FR800557 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:2357894 - go to primer design |
| BLAST e Value | 3e-37 |
| Hit Clone Code (BAC ID) | F24B9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | FR800557 [GenBank] |
Gene hit At1g01300
| Sequence (A. th genome BLAST matches underlined) | >31-K013162-022-018-G04-8409 TGATCCATGTAGATTGCCCGGGCATGATAGCACTTTTCGAGTGGAGTTCCTCCCTATAGC GAGTTGATATTACTATCTGATTAAACCGGTGACCGGTTTGACCGGGGAACGATAATTTAC CTTTACCGAGTCCTAATAAACCGGCGGCTCCGACGAAGAGACCTTCGTTGTCGTGGCCAC ATCCGAGAGCAACGCCTTTAACGCGATTTCGCCGGAAAGTTAGCGTTTCGGTGGAGAAAT CGCCGACGGTGAAAGAACCATCTCCGTAAGAGACTTGGTATAGACAATTCTTACGACGGG TGTTGCATCCGGCGGAGTCTAATCGGTGGCAGTGAGGTGAAGAACAGGGGATTGTGGCAT AGGTCTTGGATTTTCTCGGGTCGAATATCGGGTGGGATTGTGAGTATCATGTCCGACAGG GATCGCATTGTAGCCAGACGATGTCGCTGCCGGTGTCGAGCACCATGTAAACATATCTTG CCGGAGTGCCGACACCGAGGCGCGTGAAGTATTCACCGCTTCCTTGAGAGAGACCATAGA CGACTGAGCTGCTGAATCCACCGGGTCGTGGTGCGTGAGTCACGTTCCTTCCGGTGATTT GAGCGGCGAGTGTGGTCCCCGATTCCCCGTGCGTCCACCCCCCTCGCAAACGTGCCCCCC ACTGCGCGTTCTGTTCCCTCTTTCCCCGTT |
| GenBank Accession | AL752978 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:117940 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F6F3 |
| Hit Gene Code | At1g01300 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Eukaryotic aspartyl protease family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g50830
| Sequence (A. th genome BLAST matches underlined) | >90-K013933-022-018-G04-8409 TTTGATCCATGTAGATTTCCCGGACATGAAGTCCTTTACAATTGAAGAAACCATATTGAC TATTCACTCTATTTTCATGTAGATTGTCGTCTCTAATGAATTTGCAGATAACTTTGATGT CTAAATAACTGTATTGGTCACATGACTCATAACATCATTAATGTCTCCAAGATTATTTGT TTAGTCAAGAAAAAACCCCGAAAAACGGAAAGTCTTTTGTGAGGGTTAATCTAAAGACTT CTTGTTCTACATGAAATTGGATGGTTGCAAACTGATAATGTCTTAGTAATAATTAAGTCC AATTAATTATGCATAAAATCATATTGTTAAATTATATTAAAATTGTGATGCTCCCTATCT TGAGTATGGTGACACATGTCTTCGCTTCTACACCATCCATGCATATTGCATACATATTGC TCATCAGCCTAAATTAATCAAATGGGATCCTCCCTATAGTGAGTCGTATTACTC |
| GenBank Accession | AL752980 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:20683126 - go to primer design |
| BLAST e Value | 4e-180 |
| Hit Clone Code (BAC ID) | K7B16 |
| Hit Gene Code | At5g50830 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nuclear polyadenylated RNA-binding protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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