SimpleSearch - Line and FST details


Line specific information

 
Line ID 038B07
Vector Used pAC161
Line Availability available as T3 set from NASC (N403571)
Segregation Analysis 50:48:43
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At4g19510

 
Sequence (A. th genome BLAST matches underlined) 
>50-K030252-022-038-B07-8409
TTTACATTGAATAATCCTGACAACATGAGAACTGTGGAATTTCAGGAATTTGAGTTTTGA
CAACATCGTGAAAGCAGCAGGAAAAAGCTTGATTCTTCTGACTTCAGACATGTTCAAGAA
GATGCCTCTAACACATTCAGTGCCCTGGTAGCAAGAGAAAAAGATTAAGGAACAGTGAAA
GGTCGACATAAAAACAAAATACCAGAAGAAGTAAACCAACTGTAGATATGATGTATGGGA
TCCTCCCTATAGTGAGTCGTATTACTCACATGCTTTTAACACTAACACTCCGAACACTTG
CGAAATTTATCAGGTTTATCCAGGGCCAAAAATCTTGAAAGATTGGATCTTGAAGGCTGT
ATGGGATCCTCCCTATATTGAGACGG
GenBank Accession CR934186 [GenBank]
Graphic View Graphic view of gene At4g19510
Predicted Position of Insertion Chr4:10635729 - go to primer design
BLAST e Value 5e-116
Hit Clone Code (BAC ID) F24J7
Hit Gene Code At4g19510 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Disease resistance protein (TIR-NBS-LRR class)
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 159D11
Other FSTs Supporting this Hit CR934186 [GenBank]

Gene hit K19E20

 
Sequence (A. th genome BLAST matches underlined) 
>50-K015223-022-038-B07-8409
CTGATCCATGTAGTATTTCCCGGACATGAAGCACTTTACAATTGAATATATCCTGTTGTA
ACTCAAAACACCGATATTCATTAATCTTATCTATGGGATCCTGCCCTATAGTGAGANATA
AAGCGGAGCAATGTTACCATACATGTAACGAGGATATACAGAGAAAATTCATGGCCGTTT
GGAATTTAAAGGACAATTGCTCTTGTGGGCTACAACGGACCGGCCCATTCGCTCATTTAC
CCAGAGGTATCCAGTTTGTGGACTTTTGATGCCGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL763581 [GenBank]
Graphic View Graphic view of sequence AL763581 of line 038B07
Predicted Position of Insertion Chr5:19839000 - go to primer design
BLAST e Value 1e-53
Hit Clone Code (BAC ID) K19E20
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37