SimpleSearch - Line and FST details
Line specific information
Line ID | 044H05 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N404217) |
Segregation Analysis | 50:43:35 |
Confirmed for Hit | T12K4 At1g48520 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Note |
Gene hit At5g66880
Sequence (A. th genome BLAST matches underlined) | >40-K026600-022-044-H05-8409 CGGACAGAAGCCTTTACAATTGAATATATGCCGCCCTACATCGTCTCGTTACCAGAGTCT TGCTATTGTGGGAGATCTTTTTCCACTTATTTTCGCGAATCTTCGTCTTCTTCCTATGGG ATCCGCCCTATAGTGAGACTATGGGATCCTCCCTATAGCGAGTGGGATTACCCCCACCCG TGTGGGATCCTCCCTAGAGTGAGAATGGTTGCCGGCCCATATTGGGATGTCA |
GenBank Accession | CR396050 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:26710541 - go to primer design |
BLAST e Value | 9e-07 |
Hit Clone Code (BAC ID) | MUD21 |
Hit Gene Code | At5g66880 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | sucrose nonfermenting 1(SNF1)-related protein kinase 2.3 |
Insertion Classification | TS2TE (5') |
Confirmation Status | failed, line belongs to a contamination group, please check line 800C12 |
Gene hit At3g42624
Sequence (A. th genome BLAST matches underlined) | >40-K015474-022-044-H05-8409 TAGTGAGAGGTGAACTACATGGAAACGTCATCGTCCTACTATCTTGAGTAGTAAGCAGGG GCCGAAGTTGAGGCGGGAGGATTTTGCTCGTTCTGTCCGGTCGAGCGTATGGAAGCTCGT CTCTATGGGATCCTCCCTATAGTGAGAAGAAAAAGAACGAGTAATTACCACTTTTTTTTC AACCCAAAAAAGTAAATATCCGCA |
GenBank Accession | AL763967 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:14714633 - go to primer design |
BLAST e Value | 9e-39 |
Hit Clone Code (BAC ID) | T12K4 |
Hit Gene Code | At3g42624 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | |
Insertion Classification | TS2TE |
Confirmation Status | confirmed, show confirmation sequences |
Other FSTs Supporting this Hit | AL763967 [GenBank] |
Gene hit At1g48520
Sequence (A. th genome BLAST matches underlined) | >49-011521-rosso-H5-35St CTTGAGTAAGGGATGACGCACAATNCCACTATCCTTCGCAAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTTTAGTAAATAATGAACTTTGGAATTCAACAACTTTGGAAT TCAAAACAGGCAAAGCACCAGGCAAACCCATACAAACAGGACAAATACTTGTGTTTGGAT AAGAACCGTAATTGTTAGAGCAACTACAAAAGGCTTTTGTCAATGTAGAGAGCTGAACAT GAGTCTCTATCCCAATTACAGCTTCGTAATCTCTCAGAATCTCATCAAGTTGGTTGCTTT TGTGGTTTTTTGGAGCAACCCTTGTTGGAGAAGACTGTTTAGCTTCATGGGTCGTCGTTG TTTGGCTTCCACAAGACCTCACGGAGAAGTTGTTACTCCTTCTCCTTCTTAACAAGCTAG TTCCGAGAAGTGAGAACTGGTTTAGCTGAATTGTTCTCAACAATGTGGGATACATGTTTT AAGGTGGGATCTAATACTTTCGGGTTGAAAATTCCANTCCCCTCCTCATAACATAATTTA AAACATAAATA |
GenBank Accession | AL763966 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:17940564 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | T1N15 |
Hit Gene Code | At1g48520 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | GLU-ADT subunit B |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |