SimpleSearch - Line and FST details
Line specific information
Line ID | 052H10 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N404990) |
Segregation Analysis | 50:50:36 |
Confirmed for Hit | T24P13 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At1g06147
Sequence (A. th genome BLAST matches underlined) | >80-K012473-022-052-H10-8409 NTGATCCATGGTAGATTTCCCGGGACATGAAGCCTTTACACTTGACAATGTTTTACATTG TGAATGGATCCGGGAATGTTCAGTGACGGGTACGTTTTCATTGTCCGTCGTGCCCACCAA CATTTATCGATATTAATTCACAAACAGAAACCGATCTTAACATCTATGGGACCCTTCCTA CCGGGAAAAAACGCCGCATCCACCTTACCCTTGTCGAAACCCGACATGGCGCCGGTATCC AGCTCTATGGGATCCTCCCTATAGTGANNNGANANGCGAAAGCTCACGAAGATTTCCAAA TCACCGCACGATCTACAATTGACGAATAACAAAGCTTAGGGAACTGCAACACACGGTGCG GAATAGTGGATAATGCCTCTCCATCCGGGCCAACCACCCAACATCCAGGGGCATCTGGGC GGTCCCCTCAGAGAGAGCCGCATCACTATGGAAAGATAATGTGGCCGCATAAGAAGAAGA TTTTCCCGTGGCGCATACCACCGTTGCTCTATGGAACCCTGCCTATACTCCCTGCCGTTA AGGCGGAGACACCCTATGAGGGCCGCGCCCCCCCTCCAGGGGATTGGGGCCTCTCAACAT AACCCCTTACCACTGTCGGCAACACACAAAACCCCGAATTAACATCTGCGCCTATGGATA CCCACCATAAGCACGGCCTCGACCTCCAGTCTATTTCTTATTCGAGTGTTATCCGACTAC CGAAGACTCAAGTCCGTAATAATTAATATATAATNAGATAATAATAAATAGNGAACATGT ACACAAATACTGAAATA |
GenBank Accession | FR801591 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:9938951 - go to primer design |
BLAST e Value | 7e-12 |
Hit Clone Code (BAC ID) | F3H9 |
Hit Gene Code | At1g06147 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | long noncoding RNA |
Insertion Classification | TS2TE |
Confirmation Status | unknown |
Gene hit T24P13
Sequence (A. th genome BLAST matches underlined) | >80-K012299-022-052-H10-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTAATACTTTAAGGGTATTATGTATTTAATGAAAATGTTCATCGACACCTAACATGATT TCTTGCTTCAATCGGCGAATGTTCTTGTGCACATACGTTTTGACCACAAGGAATCAATTC TTCACCAATTCATGGAAAGCATAAAGATCGCGGCCAATACTACAGCTAATGTGTTCGTAA GAATATTTCTCATTGTCTTCGAGAGTTCAAAGTAATTAGGTGTTTGTATATAAGATAGAC CTAGAGATAAATATAGCAGTCTCCCATTTCTGTTCTGATTGATAACTCTTTATTGTTGCG ATAAATGGAGTACCACCAAGTATCTTACTAATCAACACTACCAAAAATATAAATTGCAAT GTGATTAGTAGTTTTTGGTATGCACATGAGTTGATTGATACAAGGCATATATATATATAT ATATGACATACTACGGCTAATGACCAAGAACATGCAAAAGAAATGTCTGAGATATCTAAT AACACTTAACTCACATAAGAGTAAATACACATATACCCGATAATATTAATGCCCTATGGG ACCCTCCCTATAGAGAGTC |
GenBank Accession | AL753921 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:9277189 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | T24P13 |
Insertion Classification | Genome Hit |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | AL753921 [GenBank] |
Last Updated on 10.06.2021 13:37 |