SimpleSearch - Line and FST details


Line specific information

 
Line ID 070F01
Vector Used pAC161
Line Availability available as T3 set from NASC (N406685)
Segregation Analysis 50:43:42
Confirmed for Hit At5g57290
Parent of DUPLO pair 1628
Parent of pair(s) 3695, 3752, 3853, 93955, 93957, 93958

Gene hit At5g57290

 
Sequence (A. th genome BLAST matches underlined) 
>06-011732-strizhov-F1-oriL
TTGATCCATGTAGAATTTCCCGGACATAGAAGCATTTACAATTGAAGGCCAGGATATTGA
ATATATAAATTGGGAATATAAGCTTCGTATCATTCATTTCAACAACTCATCATACAATTC
AACAATGAAACAAGTATCATGTATGCTTCACCAAATTGAAAATGAGATTAGAGCAAAATG
ACACACACAATACAATGTACCTAAAAAACAATATACATTAAAATACAAATCAAATTTTCA
GATTCTTCTTCACCAATGGAATCATAATTGAAGATTCTATCACAACTATGGGATCCTCCC
TATAGTGAGTCGTTTTACCTCAATNATNATGAGAACTCCAGATTGGTCTGAAATTGGAGT
TGCTCTGTTTGCTACCCATACCACAGCTTTATCCTCGATGTTCCCATACCAAATCCCTAT
GGAATCCTCCCTATAGTGAGTCGAATAACTCAANNNNNNNNNAACGNACTNGCCCTTTAT
TCTTTTGTTGGCTCTTATCTTGTTT
GenBank Accession AL768166 [GenBank]
Graphic View Graphic view of gene At5g57290
Predicted Position of Insertion Chr5:23207261 - go to primer design
BLAST e Value 2e-46
Hit Clone Code (BAC ID) MJB24
Hit Gene Code At5g57290 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 60S acidic ribosomal protein family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37