SimpleSearch - Line and FST details


Line specific information

 
Line ID 075E02
Vector Used pAC161
Line Availability available as T3 set from NASC (N407154)
Segregation Analysis 60:53:50
Confirmed for Hit At5g48720
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g48720

Sequence (A. th genome BLAST matches underlined)
>13-011890-strizhov-E2-8409
TTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGAATCT
ACAACATCCATCATGAGGAGATTTTCACATACTAGTGGGATACTCCCTAGAGTGATGCGT
ATATACGAAATATATTCTAAATTATGTATAAAGTTTGATAGATCCCAAGGGACCCATAAT
CTCGTTCCCCAATGAGCGATCTATGGGATCCTCCCTATAGTGAGTCCCATTACATCAAAC
ATATTGTTTTTTTAATATCAAAAACGCAACATCCCAACCTGTTATCTGTCCATGTAGCAC
CATGTTGACTAAAGAGGGACTCTCTAGAATCCTCATTATAGAGAGATGATTTAGCATTGA
CAAGCTAAAATCCAAATCCTAAATGATTGATGAAACATTAAATGACCAAACATTTCTTAA
CTCACAATTAACATCAAATCCAACATTTCATCTTCGCATTAAAAACACAGAAATCAATCA
AAACCTAAAACCCAGTAACCACCACCAAATCTAAGCGAAACCACAACGATTACAGTGAAA
CCCATACAAGAGAACACACGAATCAGACTAAGAAAGCCCCAAAACACACCAAAATCGAAG
AATGTACTAATCAATCCAACCCACAATCCCAACGAGAAAACAAAAACCAGAAACCCTTTC
AAATCCAAAATAAACCCAATTCAGAAGAAATAAGCACCGATAAAAGAGAAAATCTACCGA
TCGTCGTCTCCGTAATCCCTCGATCTTCTTCTTGCCTCTACAACT
GenBank Accession AL768512 [GenBank]
Graphic View Graphic view of gene At5g48720
Predicted Position of Insertion Chr5:19759915 - go to primer design
BLAST e Value 5e-173
Hit Clone Code (BAC ID) K24G6
Hit Gene Code At5g48720 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation x-ray induced transcript 1
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details