SimpleSearch - Line and FST details
Line specific information
Line ID | 076C06 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N407230) |
Segregation Analysis | 50:45:31 |
Confirmed for Hit | At5g05540 |
Parent of DUPLO pair | 12269 |
Parent of pair(s) | none |
Note |
Gene hit At5g05540
Sequence (A. th genome BLAST matches underlined) | >43-011889-strizhov-C6-8409 GTGATCCATGTAGATTNTCCCGGACCATGAAGCCTTTACAATTGAATATATATGGAACAT TGCAAGGGATTCTATGAAGGTAGAGCTTTGACTTCTCAGCTTCCAACATCTATATGGAAT TATGCAGACAAAACGTTATGCTTTTATAAGTTTAGATTGAACTAATGAAGTTTGTGCAAT CCAACTTACCTCTTTAGATAGTGGAACGGAGGTCTCTGCTCCATTATCTATGGGATCCTC CCTATAGTGAGTCGT |
GenBank Accession | AL768607 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:1638202 - go to primer design |
BLAST e Value | 8e-98 |
Hit Clone Code (BAC ID) | MOP10 |
Hit Gene Code | At5g05540 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | small RNA degrading nuclease 2 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At3g28520
Sequence (A. th genome BLAST matches underlined) | >43-011919-strizhov-C6-8409 TTTGATCCATGTAGATTGTCCCGGACATGAANGCCTTTACAATTGAATATATATGGAACA TTGCAAGGGATTCTATGAAGGTAGAGCTTTGACTTCTCAGCTTCCAACATCTATATGGAA TTATGCAGACAAAACGTTATGCTTTTATAAGTTTAGATTGAACTAATGAAGTTTGTGCAA TCCAACTTACCTCTTTAGATAGTGGAACGGAGGTCTCTGCTCCATTACCTATGGGATCCT CCTATAAGGGAGAANATTACCGACAACCGCATAGGTATATATCCTATGGGATCCTTCTAT TAGTGAACGCACTCTCTTTTCCTTCTCTCAGAACATGATCAATATAAGTGTTTGTGATTA TATCTCTGTGATGATTCTCGAAAGTCAGAGTCAAGCACCTTCCCTCCTTCAAAGCATGCT GATCCTCTTTATCTACCACGGTGGAAGACCATACCACGTTTGCACCTTGGAATACAACTA CAACTGCCTCGTCGCTGTGCAAACAAAGAACCAACGATTTGCTGTTATCCGATTCTTAGG CCTTTAATCTCTTGGCCCTATGGGATC |
GenBank Accession | AL768608 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:10689042 - go to primer design |
BLAST e Value | 8e-104 |
Hit Clone Code (BAC ID) | T20D4 |
Hit Gene Code | At3g28520 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | failed, line belongs to a contamination group, please check line 076C01 |
Last Updated on 10.06.2021 13:37 |