SimpleSearch - Line and FST details
Line specific information
| Line ID | 081B12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N407704) |
| Segregation Analysis | 100:100:99 |
| Confirmed for Hit | At5g16530 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g16530
| Sequence (A. th genome BLAST matches underlined) | >90-K016180-022-081-B12-8409 TGTCCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATGTCAAGTTTTTGTCTCT TCCGTTGAATCTGAGGGACATTAGATTGACGACATGCCTGATAGGTATTTGCGCATGACA TAGTACACCAGATTATTAATAGCCACGTCGAATACACAGATTGAGGAAAGCGAAAAGCTT AACCTTGGACTTCGACTCAGACTCATACAAGCCTATGGGAGCCTCCCCTATAGTGAGAAC ACTAGGTTCATCCCCTCCCTTACTCCTAGGCAAACGGCATAAATGCATACTATTGTCTAT TCCCTAACGTGTGAACCATCTAAATTATTACTTTTCTGTGTAGCGCCTGATGATCTATAG TTAAAATTTTGACAGAAATATAGGTCACGATTGTTTCTTTGCATTTGCGTTTATATTTCC ATGTGACAAATGACTATGGGATCCTCCCTATAGTGAGACC |
| GenBank Accession | AL937499 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:5401306 - go to primer design |
| BLAST e Value | 3e-63 |
| Hit Clone Code (BAC ID) | MQK4 |
| Hit Gene Code | At5g16530 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Auxin efflux carrier family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g64360
| Sequence (A. th genome BLAST matches underlined) | >90-K016179-022-081-B12-8409 TGATCTGTANATTTCCNGGACATGAAGCCATTTACATTGAATATATCCTGGAGATGACGC TGGTGATGATGGTGATATTTATGTTGCGATTTCGGATGGAGATGACGCTGGTGATGATGG TGATTGGCATAGATGCGCGCACGAGTGATATAAGAACACCAATGTTGGGAAGCGGAAAGA AACGTATGTGAGAAGTAACAAGAAACATGGAGTTGAAGAAGTCCAAAATGTAGAAAGTAT CAGTAGTGCTATGGGATCTCCCCTATAGTGAGANNNNNNNNNNNNNNNNCNNNNNNNTGN NCNNTGNAATCCNAGGAGGNNNCCGGATATTACCCTTTGTAGAAANAGCTCAATTGCCCT TTGGTCTTCTGAGACTGTATCTTTGATATTTTTGGAGTAGACAAGCGTGTCGTGCTCCAC CATGTTGACGAAGATTTTCTTCTTGTCATTGAGTCGTAAGAGACTCTGTATGAACTGTTC GCCAGTCTTTACGGCGAGTTCTGTTAGGACCTCTATTTGAATCTTTGACTCCATGGGAAT TGGGGATCCTCTATGGGATCCTCCCTATAGTGAG |
| GenBank Accession | FR802377 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:25737720 - go to primer design |
| BLAST e Value | 2e-61 |
| Hit Clone Code (BAC ID) | MSJ1 |
| Hit Gene Code | At5g64360 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Chaperone DnaJ-domain superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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