SimpleSearch - Line and FST details
Line specific information
Line ID | 102H08 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N409788) |
Segregation Analysis | 50:45:42 |
Confirmed for Hit | At1g79340 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g14720
Sequence (A. th genome BLAST matches underlined) | >64-K012501-022-102-H08-35St GACAAACTGACGTAAGAGAACCACACACTTTCCCCTATACCATCGCAGACCCTTCCTCTA TATAAGGAATTTCATTTCATTTGGAGAGGACAGGGCACCCGGGGATCAGATTGTCGTTTC CCGCCTTCGGTTTAAACTATCACATTGTCATACCTGCATTTGTGATATATATTCAATTGT AAATGGCTTCATGTCCGGTAAAACTACATGGATCATCAATGAGTATGATGGTCAATATGG AAAAAAAGAAAGAGTAATTACCAATTTTTTTTCAATTCCAAAATGTAAATGTCCGCATCG TTATTATAAAATGAAAGTACACTTTTGATAAAACGACAAATCACGATCCGTCGTATTTAT ACGCGAAAGCAATAAACATATCATTCTAATTCGGAAATCTTTATTTCTACGTGCCTACAT TCACGTCCAAATGGGGGCTTACATGAGAAACTTCACGATCGATGCCTTGATTTCGCCATT CCCAGATACCCATTTAATCTTCAGATTGGGCTGATATTATGCGAAAATATGCACTCATAT ACCTAAATACTGACAGCTCGAGCTACCAATTCAGTGTGGCCCATTACCTTACATAATTCA CTCAAATGCTATGGGATCCTCCCTATATAACTNNNNNNNNNCNNNNNNGAAAAAANNNGG GGAACCCCTTTAACCCCCGTAAATGATTGAGTCTCAAAAAGCAGTGGAGACATGCTTTTN AAGGAAAACACAACTGGGGGAATTTTGGATTTAAAAAAAACCACAAATTTCCCTTTCCAG GCCCNAAAAGGAGAAAATTGCAGAGAATTTGGGGTGCCTTTATATCTCCTATTGGGGTGT AAATTTGGTTTGACAGGTTTATATTTAGGGGACAACTACTACAGTGATTTTCTTATTATG GGGGGAAAATTTTCCCCACCTTTCTTTTGTACTTA |
GenBank Accession | FR803033 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:4748767 - go to primer design |
BLAST e Value | 3e-14 |
Hit Clone Code (BAC ID) | T15N1 |
Hit Gene Code | At5g14720 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Protein kinase superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Gene hit At1g79340
Sequence (A. th genome BLAST matches underlined) | >64-K012380-022-102-H08-8409 TATAGACGACCATAATAACCTATACTCAGCCTACTGGCAAGAACATCCGCCGCGCGCTTG CTGATCTCGTCGAATCTGCCGATTCCGGCGACGTTCTTGTCGTTCATTACAGTGGACACG GTACGAGGTTGCCGGCTGAGACTGGTGAAGACGATGACACTGGTTTCGACGAGTGTATTG TTCCTTGCGACATGAATCTGATTACTGGNGAGTTTTATCTCTCTCTTTTTTTTGGGATTG ATGGCTACGATCTGACGATCCTATAATAATCAGAAGAATCTTTTGAGGGAAAAGTTTTGA TTTTTTTGGAAATTTGGTGATCTTATTTTCGAGATTGGTCTCTCATAAAGTCATAGCTGA GAAAA |
GenBank Accession | AL755855 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:29842692 - go to primer design |
BLAST e Value | 4e-146 |
Hit Clone Code (BAC ID) | YUP8H12R |
Hit Gene Code | At1g79340 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | metacaspase 4 |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | HG968733 [GenBank] |
Last Updated on 10.06.2021 13:37 |