SimpleSearch - Line and FST details
Line specific information
| Line ID | 134H10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N412862) |
| Segregation Analysis | 100:88:66 |
| Confirmed for Hit | At2g02560 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At3g45555
| Sequence (A. th genome BLAST matches underlined) | >80-K104607-0022-134-H10-8409 CTTCTGTTCCGAATGCATGAAACAATATATAGAACTGAGGCTCCTATGGCCCCCGTCATA TAGAAGACCCCAATACCCTGGGGACGAGTGTATCNNGGGGCCTGAAGGGGAGAGTGNGGC CTTAANACCTCTTANCCAGGAGAACAAAAATTTTGGTTGCAATCCAAATAGGTATATCCC ATTAGCACCACACAAAAAATAAGATTAGGATATTTTTAACTACAGAACAGAGATTACTTT ATAAATAATATAATAATTTAAACAAGAAAAACAATAGAATAAGATAAATATAAAATACAT AATAATTAAAAAAGATAATAGAACATTTATATTAAAAAAGGAACGCAAATCACAATAATA GGAAAGAAAATAATATATAATAAAAAGTATTAATGTATATAGGTAATATTCAAACTATTA TTTTAGATAATAGAAGAGTAATAATAAAACCAAAAAGAGATAGATATATAATGTATTAGA CAAGTTATAATTAGATATAGGAACACAATATATCAATAACATAATATTTATATCAGTAAA ATATTATCGTAAGATTAGATTATAGTGAATTAATTTAATATCTTATTTATAATAATGATA ATTAATAATAATTATAAATAAAATAGATATTGACTACGATGATAATTTTTAAATAAAAAC TATAAATAATAAATATTTTAATATATATTAGAAATTTTAATTATAATTAAGATAAATATA ATTTAGAGATTGTATAATTAATTATAATATTTAAAAGACTATAATTATAATAGTAAGAAA GATTATGAGGAATTTGAAATATATTCTATAAATTTATAGTTAGATTTGTTATATTACATA ATAAATTTATAGAAAATAATTATACAAGAAAATGAGGAATATAATATAGTATTAATAGTG AAAGATATGTCTATAGTGGAAATAATATATGTATATCAAGTAAAATTAATAAAATAATCG AAAATTGAGATATTTTAAAAATACATATAATAATATCTTAATACTAAGATTAATTAGACA TATAAATTGAAATATTAAAACGTATAATATATATCAGAAAAATTAAAAATATATTAAATT TGACAAAATTATATAAATTATCTAATAACAATTTAATAATGAGGTAAGAGTAGTAGTGAA TATCAGTAGAAGAGATATGATTAAGTAAATATGATAATCAACAAATTAATATGTTAATTT TATAAGATTAATCTGTTATATTTAGTAAAAACATGATAT |
| GenBank Accession | FR804009 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:16712920 - go to primer design |
| BLAST e Value | 2e-04 |
| Hit Clone Code (BAC ID) | F9K21 |
| Hit Gene Code | At3g45555 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 146A12 |
Gene hit At2g02560
| Sequence (A. th genome BLAST matches underlined) | >80-K012718-022-134-H10-8409 TGTTATGCTTAGAGATGCATTCTGAATTTTATAGGTACGGACAACGAGCCCAGCTGCTTA TACCCGTGCAACTGATGATACTGCTGTGAAATATTCAGTAGTGGAACGACCTGAGAAATT AGATGAAATCACTCTTCCCTCAGATTTCTTCTTTCCTCATGCTAATCAAAGATGGTGACC GTGTAAGTGAAATTTTTTAACCCCTTTCTCCTGATACAACATAAAACATCAATAGACATT GGATAATAATGACACTTTGCTGTGTAATCCTAACTTTTTCCTTCTGTTGTTGCAGCATGT TAGGCGTGCAGCTGTCTCAGCTCTGAGTACTTTTGCTCATTATAAACCAAACCTTATTAA AGGACTTCTCCCTGAGTTGTTACCACTTCTTTATGATCAGACCGTTATTAAGGTAAGTTC TTCAGTGATTCAGCACAGTTGTTATCTGTGTCATATAATACATTAGAAGGTTTTATCTTC CATCGCCTGAGACATTTATCTTTTGCAGAAAGAATTAATCAGGACGGTTGATCTTGGTCC ATTCAAGCATGTTGTGGATGACNGGCTCGAGCTGANGAAAGCAGCTTTTGAGTGTGTGTT TACTCTGGTGGACAGCTGCCTTGATCAANTTAATCCGCTTCTTTCATTGNTCCTTTTCTC AAATCGGAATAAAAGCGAAGTGGTTTGTCTTCCTCTGATAAAATTAATCTACTGTTAACC ATTTTCTTTTAT |
| GenBank Accession | AL765100 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:696167 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T8K22 |
| Hit Gene Code | At2g02560 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cullin-associated and neddylation dissociated |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL765100 [GenBank] |
|
Last Updated on 10.06.2021 13:37 |
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