SimpleSearch - Line and FST details
Line specific information
Line ID | 139A12 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N413260) |
Segregation Analysis | 100:98:72 |
Confirmed for Hit | At3g23810 |
Parent of DUPLO pair | 1213 |
Parent of pair(s) | none |
Gene hit At3g16020
Sequence (A. th genome BLAST matches underlined) | >89-K012875-022-139-A12-8409 NTTTTGATCCATGTAGCATTTCCTCGGACATGAAGCATTTACAATTGAATATATCCTGGT TGACTTCTCGTTCCAGAGCTCAAGCTGTGCAATCACCTGGTTGGTGAATGAGCACGACAT CACGAAACTCGGGTGTCCAGTGGCGCATCCCAAGTTCATCAAACGACCTTCAGCTATGGG ATCCTCCCTATAGTGAGTCGTATTACTCAACNNGNNNNTNGNCNCTNNTCNNNTNNNNAC TNTNCTTTAACAANGAAATCGCCTGATTATCACCCTTCTCTTCTAACTGCTGATGAATAT ACTGGAGTAATGCGATTCTTAGTAAAGCTCTCATTTTTAGATAAAGTGTTCCACTTTCTG CAAGTAGATCGCAATGCTCTCGATGATGTCACCGGAACCCTATGGGATCCTCCGTATAGA GAGTCGGATTACTCAATAAGAGCCTGAAGAGCACAGATTGGATCAATCTCAGGCGCTATG ACACGAGCACCCGGGGTTTTTATTGGCTGCAACTCGCCTATATACTACNTCGCCGTGCCC GCCGAGGACAGGCACCCTTTCAGCCATCGTAACATCAGTAGCCCTCATGAGACC |
GenBank Accession | AL765427 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:5438562 - go to primer design |
BLAST e Value | 2e-70 |
Hit Clone Code (BAC ID) | MSL1 |
Hit Gene Code | At3g16020 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | F-box associated ubiquitination effector protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Gene hit At3g23810
Sequence (A. th genome BLAST matches underlined) | >89-K012875-022-139-A12-8409 NTTTTGATCCATGTAGCATTTCCTCGGACATGAAGCATTTACAATTGAATATATCCTGGT TGACTTCTCGTTCCAGAGCTCAAGCTGTGCAATCACCTGGTTGGTGAATGAGCACGACAT CACGAAACTCGGGTGTCCAGTGGCGCATCCCAAGTTCATCAAACGACCTTCAGCTATGGG ATCCTCCCTATAGTGAGTCGTATTACTCAACNNGNNNNTNGNCNCTNNTCNNNTNNNNAC TNTNCTTTAACAANGAAATCGCCTGATTATCACCCTTCTCTTCTAACTGCTGATGAATAT ACTGGAGTAATGCGATTCTTAGTAAAGCTCTCATTTTTAGATAAAGTGTTCCACTTTCTG CAAGTAGATCGCAATGCTCTCGATGATGTCACCGGAACCCTATGGGATCCTCCGTATAGA GAGTCGGATTACTCAATAAGAGCCTGAAGAGCACAGATTGGATCAATCTCAGGCGCTATG ACACGAGCACCCGGGGTTTTTATTGGCTGCAACTCGCCTATATACTACNTCGCCGTGCCC GCCGAGGACAGGCACCCTTTCAGCCATCGTAACATCAGTAGCCCTCATGAGACC |
GenBank Accession | AL765427 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:8588185 - go to primer design |
BLAST e Value | 1e-59 |
Hit Clone Code (BAC ID) | MYM9 |
Hit Gene Code | At3g23810 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |