SimpleSearch - Line and FST details


Line specific information

 
Line ID 146D12
Vector Used pAC161
Line Availability available as T3 set from NASC (N413968)
Segregation Analysis 50:11:10
Confirmed for Hit At5g18120
Parent of DUPLO pair 2285
Parent of pair(s) none

Gene hit At1g03820

 
Sequence (A. th genome BLAST matches underlined) 
>92-K104555-0022-146-D12-8409
ACAGATGACCGGAGGACGGTTGGTATTTCTAGTCCCTCTGGACTTGGTAATAGCACTCAT
TGCTCCGGGATCCTCCCTGTCGTGCGTCGTATTCTCCCCTTCGTGATGGCTTCTTTGGCT
CTGAAACCCATTTTTTGTTTCATTGCTGTTTTTTGCTTCATCGTCCACAATGTTGAAGCT
ATGGGATCCTCCCTATAGTGAGTCGTATTACTCACCCCATCCTTCCTTCATTGGTATACT
CTGATTTGGTAGCTCCCCTTGATTGTTCTTTTCTTG
GenBank Accession FR804341 [GenBank]
Graphic View Graphic view of gene At1g03820
Predicted Position of Insertion Chr1:960795 - go to primer design
BLAST e Value 7e-34
Hit Clone Code (BAC ID) F21M11
Hit Gene Code At1g03820 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation E6-like protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At5g18120

 
Sequence (A. th genome BLAST matches underlined) 
>92-K012980-022-146-D12-8409
TTGATCCATGGTAGATTTCCCGGACATGAANGCATTTACAATTGAATATATCCTGAACGG
GACACGCTCTGACAACAAAGGACTGGGGAACAGCTGTTGCTTCTTAGCACGGGGGCACAC
GCTCATAGCACTATTGATCTCTCGAGACTGCATGTCTGGTACATGTATTATTCATACTTA
GGAGATGCTCCCTATGGAGTCCTCCCTCATACTGAGTCGTTCACTGATGCCTTTTGCTTC
ATCGTCCACAATGTTGAAGCTATGGGATCCTCCCTATAGTGAGTCGATTTACTACAAAGC
AGAAAGAGAGCCATATATGGTACTTGCACTAATGTTTCTGGCTTTGAAACTGGCAATTTT
GATCTTCCCCATGATGGGAGCACGGCTGAAAACGTTATGGGCATTGTATGTTCCGCATCT
GAGCTTGGGAATACTCGGCGAGACTATGGGATCCTCCGTATAGCGAGCCTTATTACTC
GenBank Accession AL766045 [GenBank]
Graphic View Graphic view of gene At5g18120
Predicted Position of Insertion Chr5:5993160 - go to primer design
BLAST e Value 2e-64
Hit Clone Code (BAC ID) MRG7
Hit Gene Code At5g18120 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation APR-like 7
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37