SimpleSearch - Line and FST details


Line specific information

 
Line ID 151C05
Vector Used pAC161
Line Availability available as T3 set from NASC (N414429)
Segregation Analysis 150:57:55
Confirmed for Hit At5g52545
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At3g11770

 
Sequence (A. th genome BLAST matches underlined) 
>35-K013138-022-151-C05-8409
TTTTGATCCATTGTAGATTTCCCTGGACATGAANGCCTTTACAATTGAATATATCCTGCC
ATTGATCCATCTAATGATCGTCTTGAAGCTGCTGCCATTGAAGGTTGGCTTATTTTCAAT
GTCTACGATCAATTGCAGCAGTGATTTTTCGTGGCAGTGTTCTTCATGTAACTCTTATGT
TAACCTTCTTGATCTAATGGATTTGTGAGATTGCGCTTGATTGCGCTTGATTGATTCATG
TTGTGTATTGTGATGAGTGAACAATACTGTCTGAATAAAACATGCCCGGCCTTGTCTTTT
TGTCTGAAGATTTTGAGATTATGGTACAATGCCAAAATTTTAAGCTGTAAAAACATAATG
AACCAAAAAGAGACAGCGAAATAGAACGAGCAAAAATGTAAATTCCTTGGATAGTTAGAT
ACAAACTGGTTTAACTCTAAATCACATTCACAAGTTAGTTACAAAACTTACAAGAAACTC
AACAAAACGTTAGCAACTCTGCCTATGGGATCTC
GenBank Accession AL757645 [GenBank]
Graphic View Graphic view of gene At3g11770
Predicted Position of Insertion Chr3:3721564 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F26K24
Hit Gene Code At3g11770 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Insertion Classification CDSi
Confirmation Status failed

Gene hit At5g52545

 
Sequence (A. th genome BLAST matches underlined) 
>35-K013133-022-151-C05-8409
TTGATCCATGTAGATTTCCCNGACATGCAAGCCTCTACTGTTATACACAAGATTCTTGCG
ATCTAATATCTCTGGCTCCAAGGAACTCAACAGGTTGCAGATCCTCGGGCTTTCGCAGCT
ATGGGATCCTCCTTATAGTGACAATGTACAGCTCTGGGTTCCCAATGTACGTGCTATCCA
GCNAGAAAGAGACCTTTTCTACCTTTATCCCCTGCTATGGGATCCTCCTAAAATGACTTT
TTCGTCTCGGCTCATTTGTCCTGAGCTGCTCCCGTTTACAAATCTGGTTCTGTTTCCTTC
TGGTAATGATCTTTTGGAGTGATCATGAGAGGAATCTTCTATGGGATCCT
GenBank Accession AL757644 [GenBank]
Graphic View Graphic view of gene At5g52545
Predicted Position of Insertion Chr5:21323855 - go to primer design
BLAST e Value 4e-53
Hit Clone Code (BAC ID) T4M5
Hit Gene Code At5g52545 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RNA-binding protein-like RNA recognition motif protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37