SimpleSearch - Line and FST details


Line specific information

 
Line ID 180G04
Vector Used pAC161
Line Availability available as T3 set from NASC (N417260)
Segregation Analysis 100:89:89
Confirmed for Hit At3g23840 At1g33612
Parent of DUPLO pair 2639
Parent of pair(s) none

Gene hit At3g23840

 
Sequence (A. th genome BLAST matches underlined)
>31-K013602-022-180-G04-8409
TTGATCCATGTAGATTTCCCTGACATGAAGCACTTTACAATTGAACATATTCCTTGTGAC
CGACTGCGGCGATTCTACCCCATAACTTTCGGCTCACTAATAACTAACTTTACTCATATC
CCAATCGTGGAGTTCGCTCCGTATACAATACAATCCGAAACATCATAGACGAGTCTCATC
GATCACAACCCCTATCATCTTTCGCTTCAGCCGATCGATTTCACAATCTGCTCCAAACTC
GCCTCCGCCACCGAGAAATCGACGTGAATGGAACTTATCCTCTGACCATTTCTCACCGGC
CTATGGGATCCTCCCTATTAGGGA
GenBank Accession AL771489 [GenBank]
Graphic View Graphic view of gene At3g23840
Predicted Position of Insertion Chr3:8612401 - go to primer design
BLAST e Value 8e-58
Hit Clone Code (BAC ID) F14O13
Hit Gene Code At3g23840 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation HXXXD-type acyl-transferase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g33612

Sequence (A. th genome BLAST matches underlined)
>31-K013611-022-180-G04-8409
CGCTCCGTGAACGATAGAATACGAAACATAGTCAACAATCTCATCGATCACACCCCTCTG
ATCTTTCGCTTCAGCGATCGATTTCACAATATGCTCCAGACTCGCCTCCGTCGCCGAGAA
ATCGACGTGAATGGAACTTATCATCTGACCATTTCTCACCGTGCTATGGGATCCGTCTTA
AGAGGAGGCACAAACGTCGGCTTCCCCAAATCGAATCGGAGTTTGTTCCCTGCCGCTCGG
AACTCCATCAGATACTTCATCTGGCTGAGGAACTTAACCGGACTCCCTGAGATCTCGTTT
TCAGACAGATCGATGGAATCATAGTANTAGGCCCCTGCTATGGGATCCTC
GenBank Accession BX890862 [GenBank]
Graphic View Graphic view of gene At1g33612
Predicted Position of Insertion Chr1:12192753 - go to primer design
BLAST e Value 1e-71
Hit Clone Code (BAC ID) T1E4
Hit Gene Code At1g33612 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat (LRR) family protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details