SimpleSearch - Line and FST details


Line specific information

 
Line ID 189B03
Vector Used pAC161
Line Availability available as T3 set from NASC (N418063)
Segregation Analysis 50:46:44
Confirmed for Hit At5g05270
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit F23M19

 
Sequence (A. th genome BLAST matches underlined)
>18-K014625-022-189-B03-8409
TTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGATAAA
AGGAGAAAAAGAAACCGGATATGCATGTCGACCCTATGGGATCCTCCCTATAGTGAGAGG
NGNNCTNCANCAGNATTTTCCTGTCTTTTTTAGATGATAAAATGAGCTCAGTTCCCCTGT
GCATTTGGACGGAATGTTTCTCAGGCTAAGCATCCAAGTTACCTTGTATTTGCAGGCCGA
TTTCAACTGCCCGGCTCTAGATCATGCTCATTGGCCATCCAAGT
GenBank Accession FR805391 [GenBank]
Graphic View Graphic view of sequence FR805391 of line 189B03
Predicted Position of Insertion Chr1:12524652 - go to primer design
BLAST e Value 7e-12
Hit Clone Code (BAC ID) F23M19
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g05270

Sequence (A. th genome BLAST matches underlined)
>01-K121887-0022-189-B03C-8409
CTCCATCTCCGCTGAAAATGTATAATAGTAAGCAGAGGAACCGGTTCAATTTCGTTGGAC
ACGTACTTAACCAGATTAATTAAGTAAACCGGAGTTTAACCAGTTGAATCAAAGTAAACC
AAAATAAGAAGCCAAACCAAATAATGTATTTATTGAACCACGTAGTCTCCATCTAAACCA
GAGAACCCTAATTCAAATTTTGATTTGAAAACATGGACTAATTAAGATTACCGGAGGCAA
GGGCGTCGAAGAAGTCATCATCGCCGGCGAGTTCTTTTCCGGTTTTGCCTTTCCAGTTAT
CAAGATGTGTTTTAACATCTGAAGGATCTAAGTAAACTCCGATCGCAGTGAACTTCACTT
GAAGAAAGTGGATCTCAATGTCTGTGATCCCTATAACAAGAATATGAACAATCCATATAA
AATTATTGTTACCTGCGATTTTGTTATGTATCGCATTATAAGGTATCAGACATTAAGAAA
GCAAAAAAGAAATAAAAACCTTGGCCCAGAAGAGAGAGTGGCTTGGAAGTGATGATCTGT
GGAGGAAAAGGAACCTCGTGAACCATGACCATCTCTGTTCCCACTGTTTGATAAACAAGA
ACACACAAATCTTAGGAAAAAAACAAAGCATTGAAAAAAAGACAATGAGAATAATTGAAA
CTTGTTAGAACTGAAAATCTTACTTTAGTGGATAAACTTGTAATAAAAAAGAATGCAAAG
AGTGTAAGACTTACTTTCTAATTTATATTATTTTGAATCTGAGAGTGAAGAAATTTATAA
ATGGCTTGGTGTACTATTTTACGATCTTAGAGAAACAATATCGAAATTGTAAATGTGAAT
ATCTCTCTCTATATAATAAGCCAGGGACTGGTGGTAGGTAACATAATTTTGCTAACGTTC
AAAGCTTGTGATCTAAAAGACGACGTATTCTTTTTATGAATTTCATTTTTTGCTACAAAG
CTTGTGATCTCAATTGTTTGT
GenBank Accession LT615054 [GenBank]
Graphic View Graphic view of gene At5g05270
Predicted Position of Insertion Chr5:1564227 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) K18I23
Hit Gene Code At5g05270 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Chalcone-flavanone isomerase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details