SimpleSearch - Line and FST details
Line specific information
| Line ID | 226C05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N421629) |
| Segregation Analysis | 50:41:37 |
| Confirmed for Hit | At3g52230 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At3g52230
| Sequence (A. th genome BLAST matches underlined) | >35-K014261-022-226-C05-8409 GGCAAGATGGAATGAAAGGAACGAGAGAAGTGACAAAAAGGAGGCGACGGGTGATGATGA TCAGAAAGATGATGATGAGGATGATCAATCATCTGATGGGCATGAAGGCTATGGGATCCT CCCTATATTGAGCCTACGAGAACAAGTCGGATTTGCTCCTTTTTCATTTCATTTTTGGCT ATAAATGCATCAGTCCTCTAACTTAGATGACTTCGATGCAACCAGTCCTCTTTACCACAT GCTTGTATTTGGGAGAAATCCTTGCTTATCACCTACGTATTCTAATGCATCAATCACAAT AGTCTATGTCTCTCTTACTCCCATTGCATTCTTTTGAACCGCACTCCGTGTCCACTATCA TCAGTTACGTGAGTCATTTAGGCCCCCTATCTATGACCCCCGAATGACCCCTTCTATACA AACCGACTCTTGTGTTCTTGACCTCCTTGTATCCATGACAGAGAATATTTCTTACTA |
| GenBank Accession | AL761522 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:19372286 - go to primer design |
| BLAST e Value | 3e-20 |
| Hit Clone Code (BAC ID) | F4F15 |
| Hit Gene Code | At3g52230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit K19P17
| Sequence (A. th genome BLAST matches underlined) | >35-K014265-022-226-C05-8409 AACGACATTATGATCCCGGTGATACCCTGTCCTGATGCAATGAAATGCACTTCCTTATAT AGAGGAAGGGTCTTGCGAAGGATAGTGGGATTGTGCGTCATCCCTTACGTCAGTGGAGAT ATCACATCAATCCACTTGCTTTGAAGACGTGGTTGGAACGTCTTCTTTTTCCACGATGCT CCTCGTGGGTGGGGGTCCATCTTTGGGACCACTGTCGGCAGAGGCATCTTCAACGATGGC CTTTCCTTTATCGCAATGATGGCATTTGTAGGAGCCACCTTCCTTTTCCACTATCTTCAC AATAAAGTGACAGATAGCTGGGCAATGGAATCCGAGGAGGTTTCCGGATATTACCCTCTG ATGAAAAGTCTCAATTGCCCTTTGGTCTTCTGAGACTGTATCTTTGATATTTTTGGAGTA GACAATCGTGCTCGTGCTCCACCATGTTGACCAAGATTTTCTTCTTGTCATTGAGTCGTA AGAGACTCTGTATGAACTGTTCGCCAGTCTTTCGGGCGANTTCTGTTACGACCAAATATA TTGGGCCTATGGG |
| GenBank Accession | FR806105 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:21913534 - go to primer design |
| BLAST e Value | 9e-05 |
| Hit Clone Code (BAC ID) | K19P17 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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