SimpleSearch - Line and FST details


Line specific information

 
Line ID 242G08
Vector Used pAC161
Line Availability available as T3 set from NASC (N423216)
Segregation Analysis 50:45:28
Confirmed for Hit At1g05360
Parent of DUPLO pair 54
Parent of pair(s) none

Gene hit At4g34460

 
Sequence (A. th genome BLAST matches underlined) 
>63-K014395-022-242-G08-8409
TTGATCCATGTAGATTTCCCGGAATGAAGCCTGTACGTTTGGAATATGAACGTGTATTAT
GGAGATGNTGGAGAAAAAAACACTAAACTTCCCTTTTTGAACGGGCAAAGATTGATTATG
TCTTAATTGAGAACTAAACTTCTTCAACACGCTTCTAATGATGAATTCTGTAATCAATTG
TGTACCCACCATACTTTACTCAACTATGATCTGTATATATTGAACGCAGACAGACAAAAC
GCTACATATTTTTGAGTGTCTAACT
GenBank Accession FR806381 [GenBank]
Graphic View Graphic view of gene At4g34460
Predicted Position of Insertion Chr4:16477293 - go to primer design
BLAST e Value 5e-25
Hit Clone Code (BAC ID) T4L20
Hit Gene Code At4g34460 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GTP binding protein beta 1
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At1g05360

 
Sequence (A. th genome BLAST matches underlined) 
>63-K014388-022-242-G08-8409
CTGATCCATTGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGACTAT
ATATATGTGTGCAATTTACACCACAGAATCGCGGAGAGGCCAAGCTGAATACTTTCAGCG
ACTTGCGCTGCTTATACCTGTGCTCGGAAAAAGGCTATGGTATCCTCCCTATAGAGAGAN
ATGTAACGTATCTTTTGTTTCTCTTTACTTAGTCCATTACCGTTTTGCATTGTTCTGCAT
TTTGAGGTATTTGGATGATTTTTTTCTTGGTTCAGGTCAAGAAATGGGATCTTTCTTTTG
CATCCGTGTGGAACGGAGTCGTGTGGCTGATGCTTTTGAATTTCTTCCGCCATATTGTGA
CTTCAACTGCACAGAGATACCTAAAGAAGCCACAAGAAGAAGAGCTATGCGTTACTCCTT
ATATTGTGCTTACGACTATTCTAAAACCTACATCACAAAAAATCACCACACCATCAAAAC
GCTACGATATTGCCTGTGCTAGAACTACCTATTTAACATACGATTACCCCCTTGAACAAT
AATTCTTTTTCTCTCCCCCCAAACATGTGGCCATTTCTTTCATGTTCGCCGCGAGA
GenBank Accession AL939909 [GenBank]
Graphic View Graphic view of gene At1g05360
Predicted Position of Insertion Chr1:1566882 - go to primer design
BLAST e Value 3e-103
Hit Clone Code (BAC ID) YUP8H12
Hit Gene Code At1g05360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation vacuole membrane-like protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL939909 [GenBank]


Last Updated on 10.06.2021 13:37