SimpleSearch - Line and FST details
Line specific information
| Line ID | 282A11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N426987) |
| Segregation Analysis | 100:81:77 |
| Confirmed for Hit | At5g43650 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g43650
| Sequence (A. th genome BLAST matches underlined) | >81-K015177-022-282-A11-8409 TTGATCCATTGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATACTATTTTGCGCT ATGTTATCCTCCTTATATTGAGTAATACTGCCAAAAAGTTAACTTTAAATTTAATATCAT CACACTAATACAGATCTAACTACTTAATTAAAAAAACATACAACCATCTACTTTTTTTTT GCTACTAACACAAAACAACCTACCTATTATTACCTTTATGTACTTGTCAAGTTGTCATAA CCAAAGAGAAACCAAAACCGGATTCAACCAATTCGAATCGAATTAAATATGTACCTGAGT CTCGATGGTCATGGTCGCAAAAAACTCTTGAGGAGAGAAATTGGCATGGACTGTTTTCAG TTTTGTTCCCATTGATTTAAGATAATGAAGCGCTTCAAGCATTGAATCTATGGGATCCTC C |
| GenBank Accession | AL944434 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17533383 - go to primer design |
| BLAST e Value | 2e-151 |
| Hit Clone Code (BAC ID) | K9D7 |
| Hit Gene Code | At5g43650 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T6J22
| Sequence (A. th genome BLAST matches underlined) | >81-K015202-022-282-A11-8409 CTGATCCATGTAGATTTACCCGGACATGAANGCCTTTACAATTGAATATACCAACAAACT TAAAAATAAAAATCTCTTTGGTCTTTGTTATTTTTTATTTGTTCAACTAACAGAAATGAT AAGACACATCTTTAGATAATGTTTATGTCTTCTTTTATTAATTGTCTTTTTGTGTTCGTC CCAACGAAACTTAATATATAACCAATAATGATCTGAAAATGATTTTTAAGAGTGGTTAAA AATGTAGTTAGATTAATAGCTTTAAAAAAATGTATTTCCTCTTTAATTTATTAATTGAAC CCTTTATTTAAATATAAAAATCAATTAAAACCATTTTATTAAAAATAAGTGCTTACACCT GTCATTAAAAATAATTGCGTGAAACCGTCCAATACACTATTTAGACTATAAACTTAGCCA TAATGGCCCTATGGGATCCTCCCTATAGTGAGACCAAAAA |
| GenBank Accession | AL944435 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:11971733 - go to primer design |
| BLAST e Value | 1e-111 |
| Hit Clone Code (BAC ID) | T6J22 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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