SimpleSearch - Line and FST details
Line specific information
Line ID | 337A11 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N432267) |
Segregation Analysis | 50:45:38 |
Confirmed for Hit | At2g18420 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At2g18420
Sequence (A. th genome BLAST matches underlined) | >81-K016136-022-337-A11-8409 TGATCCTGTAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGCCGCCGCTGC CGCTTTGCACCCGGTGGAGCGACAGAGTTTTTAAGGACACTTTCTGCGTCCTCCGTGGGT GGTTAGGCTACCATAGCACGGACATTTGTCGTAGTTTCCGGATGTGCCCGGTGCCACGCA GTTGCACCTATGGGATCCTCCCCTATAGTGAGAGTTGGTTTGGTTCCTGGTTAACATTAG GTCTGAAAAGGTATTGTTTTTCATTATACAATTCACTAAATAGGCATCGTACTTGCATAT AAAATAAAGAATGAAGAGAGAAGTAAAAGAGTTTTCTTTTTTTACTCATGGAAGTTAGGC AATGGGTTTAAATATGGTAACAACAGAATTGGAGGGGACTTAATGAACTATGACGTAAAA CTGAGAGCGATTGAATATGTAACGTTACCAACAATACCAATAAAATTATGAAAGATAGTA TATGAAATTACGTTTAATTAATGTTTCCGGGTTGAATGTATTATATATAGAAGTAACAGT ACGATTTTTATTACATTTTTGTACAAGATTCCTATGG |
GenBank Accession | AL951556 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:7994498 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | T30D6 |
Hit Gene Code | At2g18420 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Gibberellin-regulated family protein |
Insertion Classification | TS2TE (3') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At5g04550
Sequence (A. th genome BLAST matches underlined) | >81-K016158-022-337-A11-8409 TGATCCTGTAATTTCCCGGACATGAAGCCATTTACATTGAATATATCCTGCCGCCGCTGC CGCTTTGCACCCGGTGGAGCGACAGAGTTTTTAAGGACACTTTCTGCGTCCTCCGTGGGT GGTTAGGCTACCATAGCACGGACATTTGTCGTAGTTTCCGGATGTGCCCGGTGCCACGCA GTTGCACCTAGGCTTGCGAGGAAATGCAACGATCCCAAGTTGAAGTGCTTTGAGAATTGT TTTAGTGATATGATGAAGACTGGAGCTGACCCTTATGGTTGGCAGTTTGGGTGGAAGAAA ATGGATAAGAAAGCTAAGAAAATGGAACGTTTCATATCATCTAATGCTATGGGATCCTCC CTAATAGTGAG |
GenBank Accession | AL951557 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:1305270 - go to primer design |
BLAST e Value | 2e-86 |
Hit Clone Code (BAC ID) | T32M21 |
Hit Gene Code | At5g04550 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | type-1 restriction enzyme mjaxp r protein (DUF668) |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |