SimpleSearch - Line and FST details
Line specific information
Line ID | 337G08 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N432336) |
Segregation Analysis | 50:42:40 |
Confirmed for Hit | At4g06540 At1g43620 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At4g06540
Sequence (A. th genome BLAST matches underlined) | >02-K115713-0022-337-G08C-8409 AGTGTATCCACCAAACAGAATCAGTCTAAGCCATTTGTTCAGTACAACCAAGGTTATATC CCTAAACAACAATTTAATGGATGCTAGAACCAGCAGAATCCACCACCAGGGTTCACTCAA CAACCACAACAATCCCCAACAGCTCAAGATCCTGAAATTAAGCAACTCATTCAACAAATC ATTCAAGGACAAGCTACTGGAGCTATGGCTTTTGACAAGAAGATAGCTGAATTACACAAT AAGATTGATTGTTGTTACAACGATCTAACTGTCAAGTTTGAAGCTCTGAATTCCAAAATC AAGTATGTGGAGAGTCTACTCCGAAGCATCCTCAGCAACTTCCAGGAAAAGCAGTTCAAA ATCCTAAGGACTATGCTACTACAAATACTATCACCATCCACCAAGAAGATGAGTCTCCAC CAAGTCATCAGACTCCCAATACTGAGGACAGTATGATTCAAGAAGGGGGGGGGGATTCAA CTCAAATTGCTGCACGACCACCCTGCAATTCATCAGGATTATAGAGCACACACCTTTGCT GAATACTCACCACTCTGAAAAAGATTTCAAAAGAGAAAAACTCAGGAAGGATCAGTATCA AGAGTTGATTAGTAGAGTCATCACTCAAGAAACTTACAAGAAAAAAGTCACTTAAGAAAA GCTTGATGATCCCGGTTCATTCACTCTTCCATGCTCTCTAGGACCATGGACATTCGATAG GTGCCTTTTGTGATTTGGGAGCATCTGTTAGCCTTATGCCTCTCTCTACAGCTAAAAGGC TAGGAATCATGGAATACAAGTTCTACAACTTAGTTTTACTCTTAGCTGACGGTTCTGTTG CACATCCCCATGATCTAATAGAAAATTTGCCTGTTAAAATGGGAAAT |
GenBank Accession | HG967723 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:3376288 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | F19O5 |
Hit Gene Code | At4g06540 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | |
Insertion Classification | TS2TE |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At1g43620
Sequence (A. th genome BLAST matches underlined) | >63-K016158-022-337-G08-8409 ACAAGATCAGTGTATCCACACAACAGAATCAGTCTAAGCCATTTGTTCAGTACAACCAAG GTTATATCCCTAAACAAAATTTAATGGATGCTATGGGCATCTCCCTATAGTGAGAGGNNN CATATGGNCAATAAAACTGTTAAAGATTCCAACACAGGACGCTTCGGTGATGAGTATGAA AGAAAGCAACTTAGATGTTATACCCCAGCTTTTAGTCCAGTCGCTGTGGATCCAGCACCG CCATGATGAACCTTTATATCCACAACACAAGAAACAGCCTCAATTAGAAGATAACTCTTC GGAGATGTGAATGTAGTAATATATTGAAAATCTAAAGAGGGCTTACCACAGCTGAACATT GAGGAAACAACCAATCGTGAGGACAGTCCTCCACTAAGAATACATTTTCAGGAACTTCAG TAGCAACTGCAAAATGTTAGTTGGTAAAAGTGTGTCAGGAATCAGTATAAAAGCAAGAAG AAAACCATTTCAGTACACAGACTCACAATAGAAGGTACAGAAGCTGCTTACGGTTTCCAA GGCCAACCCAACCTCGATCAACTATCCCTCTCTGTTCTGTATCTTTCAATGTTTCCAGTA TAATGTCCATTGGTTTGTTTTGGATCATCCAGAGGGTGGCAGTGGAAAGGAAAAGCCACT AGAAAGCAACTATACTGTGAGCTGAGGCTA |
GenBank Accession | AL951665 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:16426117 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | T10P12 |
Hit Gene Code | At1g43620 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | UDP-Glycosyltransferase superfamily protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |