SimpleSearch - Line and FST details


Line specific information

 
Line ID 348B11
Vector Used pAC161
Line Availability available as T3 set from NASC (N433335)
Segregation Analysis 50:48:48
Confirmed for Hit At1g71950 At4g00960
Parent of DUPLO pair none
Parent of pair(s) 12155

Gene hit At1g71950

 
Sequence (A. th genome BLAST matches underlined)
>82-K016243-022-348-B11-8409
TATCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAAATGGTTTTTGGGCAGCTTACT
AAGTTCCTGCAACTTTGCTTGTAAACATGGTCTGACTTGTTTGGTCAGTATTAAACAATT
TTACCATCCCAAAATCTGCGATTTTCGGATTCATTGCATCGTCCAATAGAACATTGCTAT
GGGACCCTCCCCTATAGTGAGANNNNNNNNNNNNANNNATGATNNNNNNANNANNAANAA
NAANAANANGATGAAGAAGGGATAAACTATTGANAAAAGAACAAATGTTTGCATTTCTCT
TTTGTATAAAATCTGGGAATTTTTTTTCAATAACGCGTGAGAGGTGACATTTTCCATTTA
TGTCACAATTTAAACCGACTCATAAATGGACGGGCTCAAATGGTTAATCCATAATCTGAC
GGCTGAATGATGTCCGTATGCAGATAATTTTATAATTCCGCTCATTTTTGTAAGTACCTT
GACTACAATGTGACATTTAACTTAAAAAATAAAATGAATCAGCCAATATTTCTAGTGACT
ACTTCGATCGTAGCAAAAAAAAATGGTAATTAAAAAGCTAATCCAAATTTCGGAAGCTTT
TAGCTTTAATTACAATATTTCCTCATGGAATTAAAGATTTAATTTTTAAGGAATTTTGAA
CGCTTCTTAAATTTC
GenBank Accession AL953059 [GenBank]
Graphic View Graphic view of gene At1g71950
Predicted Position of Insertion Chr1:27081338 - go to primer design
BLAST e Value 3e-125
Hit Clone Code (BAC ID) F17M19
Hit Gene Code At1g71950 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Proteinase inhibitor, propeptide
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g00960

Sequence (A. th genome BLAST matches underlined)
>82-K016247-022-348-B11-8409
TGATCTGAAATTTCCCGGACATGAAGCCTTTACATTGAAATGGTTTTTGGGCAGCTTACT
AAGTTCCTGCAACTTTGCTTGTAAACATGGTCTGACTTGTTTGGTCAGTATTAAACAATT
TTACCATCCCAAAATCTGCGATTTTCGGATTCATTGCATCGTCCAATAGAACATTGCTAG
AGGTGGCTTAAAAGTTACTACAGGGATAACTGGCTTGTGTGACAGAAGAGTCAGAAGCTA
CACCGCATCCTGATACCGTCGAGAAGATTCTTCCTATCGCTGGGGAGCCCATATCACCAA
GTGACGGAGTGTTCACCCACCAATATGGAACGTGCGTTGAGTTTAGACCGTCGGGATATC
CGTTGGTGGCACACTGCAGCTGCCGGGATGGCGATACTAATGCAAGCTATGGGATCCGCC
CCNATCAGTGTGGGATCCTCCCNGATAGTGAGATAACGCCGCTGAAACTTGCAACAACAT
AGACTCCAGTAGAGACTGAAACTTCAAAACTGAATGAAGAAACACTATGGGATCCTCCCT
ATAGTGAG
GenBank Accession AL953060 [GenBank]
Graphic View Graphic view of gene At4g00960
Predicted Position of Insertion Chr4:415268 - go to primer design
BLAST e Value 1e-71
Hit Clone Code (BAC ID) T18A10
Hit Gene Code At4g00960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein kinase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details