SimpleSearch - Line and FST details


Line specific information

 
Line ID 349H10
Vector Used pAC161
Line Availability available as T3 set from NASC (N433502)
Segregation Analysis 50:44:43
Confirmed for Hit At3g47580
Parent of DUPLO pair none
Parent of pair(s) 55537, 90857, 90858, 90859

Gene hit At3g47580

 
Sequence (A. th genome BLAST matches underlined) 
>80-K016244-022-349-H10-8409
CCAACCCTTGTTAACCTAAGCATGGAAGGAACTCTTTGAACGACTCTCTACCAATGATAT
TGGAAGTCTACAAATCTTGAACTACTATCACTTGAGAACAATAAGTGTTCTCGACATCTC
CCACAAACCTTGGGATATTGTCTCGCGATGGAACATCTTTTTCTACTAGGAAATTCTTTT
GATGGATCAATTCCAAATATATGATGGCTGCTGGGGGTATGAAAAGTTTATTTGACTCAC
AATGATCTATCGGATAGTATACCAGAATATTGTTGCCAACATCGCCTAGGCGGAATATCT
CTATCGATATATTACCAATTGTACGGGAAAGGTGCCTTCCAAAGGAAATTTTCAGAACTC
TACAATAGTTTTTGTATTTGGAAACAAAAACCTATGTGGAGGCATCAAGGATCTGAAACT
AAAGCCATGCCTCGCCCAAGAACCACCAGTGGAGACAAAGCATTCCTCTCATTTAAAGAA
AGTTGCAATTTTAGTAAGCATAGGCATAGCTTTGCTATTGCTGTTGGTCATAGCTTCGAT
GGTTCTGTNGTGGTTCAGAAAAAGAAGGAAGAACCAGCAGACAATAACCTGGTTCCTTCT
NAGTTGGAGATTTCCATGAGAAGATNAGCTATGGAGATCACGAAAATGCGACAAATGGCT
TCTCTTCAAGCAATATGGTTGGGGTCAGGTAAGTTTTGGTACTGTGTTCAAGGCTTTGCT
CCCGACGGAGAGCAAGATGNTTGCANTGAAAGGTCTAAACATGCAGAGACGTGGAGCTAT
GAAGAGCTTTATGGCAGAATGTGATCCTTTGAAGAACAAGGCATCGTAATCT
GenBank Accession AL953285 [GenBank]
Graphic View Graphic view of gene At3g47580
Predicted Position of Insertion Chr3:17534130 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F1P2
Hit Gene Code At3g47580 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL953285 [GenBank]


Last Updated on 10.06.2021 13:37