SimpleSearch - Line and FST details
Line specific information
| Line ID | 413F11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N439623) |
| Segregation Analysis | 50:44:42 |
| Confirmed for Hit | T5I8 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit MDC16
| Sequence (A. th genome BLAST matches underlined) | >86-K025921-022-413-F11-8409 AGTGATTACGAACATCTATATTGGAAGCAGGAATAAGATTCCATAAAGCTGTTCGCTGAG TTTTATATGAATCCCTTTGATTAAAGAATGATCTGCCCATTGGAGTATGGGATCCTCCCT ATAGTGAGACCTACTCNCGGTTTAGCCAACTAAAGCATGCCTTATGGCCGGAGCCGCGGG GGCAGGCTTAACCCCCATATCAAGTTGCAATGCCTACGGGATCCTCCCTACAGTGAGCTC CAATGTTTCCAAACACCACGATCGCTAACCCCTTCTTTACTCTCTCCCCCGACTTGATCA AACCAAACCCCCACCCTTCTCTTCCCCCACTTTCAAACTTCATAACGGCATCACCTACCC AACCATCAATCATCATCTTTCCATACCCCCCCCTGTAGACGGCCGCGATCTCCCATTATC ACTCCCTCTCATCCCCTCTCCCTCCACTCTTTACACTTCCCCCTACACTTACAACCCCAT TTCCTATTTCCTTCCC |
| GenBank Accession | FR809841 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:4654802 - go to primer design |
| BLAST e Value | 4e-06 |
| Hit Clone Code (BAC ID) | MDC16 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At2g34150
| Sequence (A. th genome BLAST matches underlined) | >86-K018003-022-413-F11-8409 TGATCATGAAATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTATTTGAATAT ATATCCTCATGTAGCCTTATAATCTTCTCTTAAGTGCTCTTGGAAGGTTTCAGAATCAAT GTCTTCAACAATCTCTGGAATAGTTTCTGCTATAATTTTCGGTTTCGATGGTTTCAGTCC TATGGGATCCTCCCTATAGTGAGANNAANNNATNNNANAATTGACCATCCTTTTCCTTTC CGCAAAAGAAAAAGTCCCCCGCCCTGTTATCAAATGACAATGCCTTTTTATAAAACCAAC AAATTCTACCCCTTTTTTCTTTTGGTCAACGCCAAAAACATTTTATCCCAATTCGGAAAT CTTTATTTCCACACTCCCCCATTTACGGCCTGCTGGGGGATTTTACGACAAACGCCTCAA TTCCCCTCCCAAACTCCCAAGAAAAAGAGGAANANAGGGCCCCACATGACCGAACCAACA CACTCCCCACACACCCCCAGCGAAACCACCCCAACAAAAGAAGAACCGCCAGAAACACAA ACAGACCCCGAGAGACCCCAATACCCGGAAGAGAGCCGCACCCCCCGAGAGGGTAATATC CGATAACCGAACC |
| GenBank Accession | BX288409 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:14420857 - go to primer design |
| BLAST e Value | 2e-55 |
| Hit Clone Code (BAC ID) | T14G11 |
| Hit Gene Code | At2g34150 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SCAR family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit T5I8
| Sequence (A. th genome BLAST matches underlined) | >86-K025920-022-413-F11-8409 TTTATTATGACTAATTCGGAATGAAGCCATTTACATTGAATATATCGCTGCTTCGAATGA AATTGTGCACACATGATTTAGCTAGTATTTAGTTTATCCAGTATATCTTAAGACGATTTG TATCGATGTGCTAGTCTATCATTACATTATTGGCCCATTCCCCATTTAATATGTGACCGA AGACACCAAACTACCGCTCCTTTAGCCAAATATAGCATGCATTATTGCAATAGCCTCGAA CGCAGGCTTAAGCCCAATAACAAGTTGGAATGTGTATGGGATCCTCCCTATAGTGAGCTC AAAGTATTTGAACGCAAGTATGGGATCCTCCCTATAATGAGAAAAGTAGATGTCTGCATC GTTATTATCATTTTTATGAACCGCTAATGTANATGACTGCATCGTATTTTTCTTATTTTT AT |
| GenBank Accession | CR397068 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:10846239 - go to primer design |
| BLAST e Value | 1e-30 |
| Hit Clone Code (BAC ID) | T5I8 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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