SimpleSearch - Line and FST details
Line specific information
Line ID | 452D03 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N443335) |
Segregation Analysis | 50:32:31 |
Confirmed for Hit | At4g13430 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At3g29032
Sequence (A. th genome BLAST matches underlined) | >20-K018813-022-452-D03-8409 GCCTCCCTATAAAGAACCTAAAGGGGTTATAAATTCGTCTTTCTACTATAGTAGACAAAA AGTCTTACTATGACACATAAGCTGCGTTGACTGTGAGAGAGTCCCTATGGGATCCTCCCT ATAGTGAGACNCTANNNATCGNTTCNTTACCCCTCTTGTGGTCAAATACTAAACATGGGC GTTCGACGGACTGATAGAAACCCTACCCTATGGGATCCTCCCTATATCTAGATCCGCCTA TGGAATCCTCCCTAGAAACTACAGGATCGGTATAAGCTTCTTCTTCTTCTTCTTCTTTCT TTTTTTTTTGACCCTCCTTCACTGGTTTTGTGTGTTGGATTTTATCAGGTGAAAACTGGG ATGACAATGAAAGAGAATATTCTGGGCGGTCGCCTCTAGTCAGCCCCACAACACTCCACC AGCCTCATCATCGCCTTCTTCCTCTGGTCCAAATCCAACTCCCTCTCCCTCACCATTACC GCCCCCACCACTCCAAAATCAACACTCCATGCGAACCCGAGCCAAAAATAGCATAACCAC ACCTGTCAACAGGCTAACCC |
GenBank Accession | BX292213 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:11018552 - go to primer design |
BLAST e Value | 1e-53 |
Hit Clone Code (BAC ID) | K5K13 |
Hit Gene Code | At3g29032 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | |
Insertion Classification | TS2TE |
Confirmation Status | unknown |
Gene hit At4g13430
Sequence (A. th genome BLAST matches underlined) | >20-K018811-022-452-D03-8409 TTTCTACTATAGTAGACAAAAAGTCTTACTATGACACATAAGCTGCGTTGACTGTGAGAG AGTCTCTATGGGATCCTCCCTATAGTGAGACGCAGAGTGATTTGGGGATTTCTTCGTTTC CTAAATCTTCTCAGATTTCGATTCATCGATGTCAGAAGAAATCGATCTCACGGAAGATTG TTTCCGTTATGGCTCCTCAAAAGGATCGGTCTCCTGGAACTACAGGATCGGTATAAGCTT CTTCTTCTTCTTCTTCTTTCTCTCTCGTTTGATTTTACTTCAATGGTTTTGTGTGTTGGA TTTTATCAGGTGAAAACTGGGATGACAATGACGGAGAAGATTCTAGCTATGGGATCCTCC CCTATAGTGAGANNNNNNNNNNNNNTNNNTGNNNNTTNTTTTTTNNGTGNTTTNNTTTTT CNCCCTCCTTNTTTATTTTGNNNGGNTGCTNNNTCTGGTCTGCNGGGTNTTTTTCGCCTG GTGGTTGGGTTGGCTCGCTGTTGCNCCGTGTTTTTTGTTTGTTTGGGCC |
GenBank Accession | BX292212 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:7807801 - go to primer design |
BLAST e Value | 1e-77 |
Hit Clone Code (BAC ID) | T9E8 |
Hit Gene Code | At4g13430 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | isopropyl malate isomerase large subunit 1 |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |