SimpleSearch - Line and FST details


Line specific information

 
Line ID 470F05
Vector Used pAC161
Line Availability available as T3 set from NASC (N445089)
Segregation Analysis 50:38:36
Confirmed for Hit At5g43870
Parent of DUPLO pair none
Parent of pair(s) 2043, 93853, 93855

Gene hit At5g43870

 
Sequence (A. th genome BLAST matches underlined) 
>38-K019032-022-470-F05-8409
GATTATGCGTCAAAAAGATGCAGAACTTCCGTGTTAAAAAAGTAAAATTAATTTACTATG
GGATCCTCCCTATAGTGAAGAATACCAACGCATTCGGGGAGGCCCTTGGGCGAACAGACA
AATGGCAAAGGGCTGCAAGCTTTGGTGATTAATAACATATACTTCCGACGCTCCAAAAAG
CTCGTGGACACCACGGGGTATCGGTGACAGAAAATGTGAGCCTTAGTGTTCCTATGGGAT
GCACCAACTGCCTGATACCCAAGGGATGGAACTGATAATCAAGTGGCCAAAAATGACTCC
GCGGTGGCTTCTGCCGCTATTTTTTTTGCCGCCCCGCCCCCCGAAGCTGCAGAGATTATG
GGAGCTGATCGTGAGCACTTGGAAAAAAAAAAAAAACTGCGGGTGGCGTGCGTTCTGCCG
GAGATATCATGACTTTGACCGCCGCTGCTGCCACAGGTATGTTTCTCCCGTTACGTGATC
ATGTCGTTAGTGAAATGTTAAAAATTGCTACGTTCATACAAATTTATGTATATGAATCCG
GTCTTTAGATTATGTCAAAATATAACCCAAAAAAGACTCAAAACCTGATCCTTCTATTTT
AAAAAACTTTCATTATGAACCATAATATAAAAGGGTAGTAGTTCTTCCTAAACCTATGTA
TAGTCCGGCAATTTAAATGTAACAATGACCAACCATGGTTTAAACTCCTTTTTCAAACTT
TGGCCTAGG
GenBank Accession BX293066 [GenBank]
Graphic View Graphic view of gene At5g43870
Predicted Position of Insertion Chr5:17634487 - go to primer design
BLAST e Value 1e-158
Hit Clone Code (BAC ID) MQD19
Hit Gene Code At5g43870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation auxin canalization protein (DUF828)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37