SimpleSearch - Line and FST details
Line specific information
Line ID | 544F04 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N452192) |
Segregation Analysis | 50:42:30 |
Confirmed for Hit | At2g42200 |
Parent of DUPLO pair | 2727 |
Parent of pair(s) | none |
Gene hit At2g36590
Sequence (A. th genome BLAST matches underlined) | >30-K020964-022-544-F04-8409 NAGCCATTTACAATTGAATATATCCTGCCACCGCTGACCGCTTTGCACCCGGAGGACGCT TGCACTGATTGATGCTACACCAAATTTGATGGTTGAATACTGAAAACCCTTCTTTTCAAA TGTGATATCCCAATACGATATACCAACATCCGCTAAAACTGAAATAACACTTTTTCTTTT TTATAGTATACCTAACACTGACATTGAAATTGAAAGCTAGAGCAACACCCCTATTGAAAA CCATCTCCATCATGGATCCTGCAAAAACTTACATCAAAGCTTTGACTCAATCTTTTCTTT AACGCTATGTCCCCGCTGTCCCCATGATTTGCCTCTGATATTTCGAGAAAATTGCATGTA ATCTTTTGCTTCCACAGATTTCACTGTATTATATATATAAAAGAAAATCAAGAGATAGAC AAACAGAACCAGACCATAGATGGACTATGCCAAAAGAAAATCATAATC |
GenBank Accession | BX572252 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:15345772 - go to primer design |
BLAST e Value | 1e-27 |
Hit Clone Code (BAC ID) | F1O11 |
Hit Gene Code | At2g36590 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | proline transporter 3 |
Insertion Classification | Promoter |
Confirmation Status | unknown |
Other FSTs Supporting this Hit | BX572252 [GenBank] |
Gene hit T23K23
Sequence (A. th genome BLAST matches underlined) | >30-K022299-022-544-F04-8409 CTTGAATATATCCTGTAGTAGTTGGTAGCTGTACTGGCCGTTAACCCACACCTATTGGCA TACTATGAGAGTAATAGAGTTAAGTGTAGTCCTACGATTTACAGAAGTCCAGATCTATGG GATCCTCCCTATAGTGAGACGAACCCTCCACTGGTTGAGGATGGCTCGGTGCGACCCTCT CTCCTGTCCGACGGAGTGGGCCAATGTAAGAACATGATGGTGGTCTTCCTATACTCGCTG GTTGCAGCCTACTAACCGAATTATCATTTTATCACCTTCCCTATGTGTTAATCAGCCGAA CATATTTTGGATTATTGCGTGCCAACATAACACAGAATCC |
GenBank Accession | BX650249 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:25508040 - go to primer design |
BLAST e Value | 8e-25 |
Hit Clone Code (BAC ID) | T23K23 |
Insertion Classification | Genome Hit |
Confirmation Status | unknown |
Gene hit At2g42200
Sequence (A. th genome BLAST matches underlined) | >30-K022309-022-544-F04-8409 AGCCATTTACAATTGAATATATCCTGCAAATGTTGATGGATATGCAGTGCGTTCACCCCA TCTACTTGGATATATTCATGGTCATTTGGATATTCGTGATCATACGATTTCCCCACCTCC GTATTCGTGGTATATCTTCTGGACTGAGATGAACCCTCCACTGAAAGAGGATGACTCAGT GAAATCCTCACCAGAGTCAGACTGATAACGCCACAGACCCCTAACAATATTATATAAACC ATATTCCAATTTACTCTAATCTCCTAGTAATGGCACACAACTTCTGCTTGAAAGTTTAAT TAGAAAACATAAATATTATTATACGAGCCTTACAATCAATTATTCAATTACATAGTAGAT TAATAATTGGACAGGACACGTCTTATAATTAAACGATAAATCGAAATCAATGTTAATACA TATGAAATATACCATCTCATCTATAAAATAGATCGGGACGCAATATAAGGAACTAATCGC AACGTACTAAATTATTATATAAATTTATCAAAAG |
GenBank Accession | BX650250 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr2:17587805 - go to primer design |
BLAST e Value | 2e-07 |
Hit Clone Code (BAC ID) | T24P15 |
Hit Gene Code | At2g42200 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | squamosa promoter binding protein-like 9 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |