SimpleSearch - Line and FST details
Line specific information
Line ID | 545D04 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N452264) |
Segregation Analysis | 50:28:18 |
Confirmed for Hit | At5g13930 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At1g65790
Sequence (A. th genome BLAST matches underlined) | >69-K022079-022-545-E09-8409 AGCCATTTACATTTGTCGGCAGTCGTCATAGATCAAACTGTCACAATTATTATCGTGGGT TGTTGTCACCCTTATCGACGCAACAACCTATGGGATCCTCCCTATAGTGAGACGAAGNAN TCNTCCCTTTGNTGGGGNNTGGGGAGTCGGTGTGTGAGGGTTTCTATAGAATGTGGAGAG AGCGTTGGGACCCTCCGAAAGGGGGGGCGAGGAGACTCTTTTAATGTGCGGGCCCCATGC TTAGATCCTATAACCCTTGAAAGTGGACTTTATATTTCCATGGGATCAATCCTTAAGATG CCTGCAGAAATATCTTAATAGGAGACACATTACGTCCCAATTGCTATGGAATCTAGCAGA AAAAGAGAAGGAGTGGAGATTCATTCTGTAGAAGAAAGGGTTCAC |
GenBank Accession | BX650370 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:24471309 - go to primer design |
BLAST e Value | 6e-05 |
Hit Clone Code (BAC ID) | F1E22 |
Hit Gene Code | At1g65790 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | receptor kinase 1 |
Insertion Classification | CDSi |
Confirmation Status | failed |
Gene hit At5g13930
Sequence (A. th genome BLAST matches underlined) | >69-K022301-022-551-E09-8409 AGCCATTTACATTGAATATACCCAACAGATCAAACTCTAATAAACCCAAGTTGGTGTATA CTATAATGGTGATGGCTGGTGCTTCTTCTTTGGATGAGATCAGACAGGCTCAGAGAGCTG ATGGACCTGCAGGCATCTTGGCTATTGGCACTGCTAACCCTGAGAACCATGTGCTTCAGG CGGAGTATCCTGACTACTACTTCCGCATCACCAACAGTGAACACATGACCGACCTCAAGG AGAAGTTCAAGCGCATGTGTACGTCTTATTACCTTCTACTTTCATTTCCTTTGTAATATA TCTTCATTCAAGACAATTAGCTATCAAGTATTTACTATTCACAAACTACAAATCAACAAT TCGAAAATAT |
GenBank Accession | FR811953 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:4488725 - go to primer design |
BLAST e Value | 2e-154 |
Hit Clone Code (BAC ID) | MAC12 |
Hit Gene Code | At5g13930 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Chalcone and stilbene synthase family protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |