SimpleSearch - Line and FST details
Line specific information
Line ID | 562B05 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N453873) |
Segregation Analysis | 50:50:16 |
Confirmed for Hit | At3g48560 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At1g15440
Sequence (A. th genome BLAST matches underlined) | >34-K021664-022-562-B05-8409 ATATAGTTTCTTTATCAGAAGAACACAAGACTTTATCATACCTGAAGTCCTGGAGGAGAT ATGGGATCCTACCTATAATGAGAGTCGATGGGATCCTCCCTTATAATGAGTAACTATCTT GTGATGGATGTTGATTATATCTCAATGGAAACCCCCTAAGGGAGCCTCCCAATAGTGAGA GGGTGGGGGATCCTCCCTATAATGAGTTACTCTGATCTGTTAGCTCCCATTTGGACGTGA ATGTAGACACGCTATGGGATCCTCCCTATAGTGAGAGTGNATGGGATCCTGCCTAAAGTG AG |
GenBank Accession | FR812336 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:5307107 - go to primer design |
BLAST e Value | 6e-05 |
Hit Clone Code (BAC ID) | T16N11 |
Hit Gene Code | At1g15440 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | periodic tryptophan protein 2 |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Gene hit At3g48560
Sequence (A. th genome BLAST matches underlined) | >34-K021689-022-562-B05-8409 AATGCCTTGTTAGATAGTGTTCCTCCTGTAGCACTCCCCGGACCAGTCCCTCCTCCTATG ATTGGTACCGATGCCTTTCCAGAGACTCCCATTGTTGAGGTAACCCCTTCCATTACCAAG CCTAACTATCTTGTGATGGATGTTGAAGATATCCCTATGGGATCCCTCCTATAGTGAGAC CTATTACTCCCCGGCCTACACTGATTTGGTACCACCCTGAACTCCCCGCTTTCGTGT |
GenBank Accession | BX651616 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:18003001 - go to primer design |
BLAST e Value | 1e-42 |
Hit Clone Code (BAC ID) | T8P19 |
Hit Gene Code | At3g48560 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | chlorsulfuron/imidazolinone resistant 1 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |