SimpleSearch - Line and FST details
Line specific information
Line ID | 620A10 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N459434) |
Segregation Analysis | 45:32:26 |
Confirmed for Hit | At4g00050 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At4g00050
Sequence (A. th genome BLAST matches underlined) | >73-K021954-022-620-A10-8409 ATCCGGAATGAACCTTTACATTGAATATATCATGAAGATCTCAATAACACAAAACCTTTT AACTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACTGGATTATGCAGAATTGGTGA CTCACTGGCTTCTGCCCCCTACGGAGTCCGCGCCACCACAGCCGCAGAGATCCCCATGTA CATACCTTAATTTATCATCTTGATAGTATAAGTGGCCACAATATAATGATAGCTTTTCTT GTTTGTCTTCACATTAAACTACATGGTATCCCAGCTAACATGGAAAATAATATCATATTG CAACCCTCGTCACAATATAATGATGTAAATAAATA |
GenBank Accession | BX656809 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:17829 - go to primer design |
BLAST e Value | 7e-48 |
Hit Clone Code (BAC ID) | F6N15 |
Hit Gene Code | At4g00050 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At5g42590
Sequence (A. th genome BLAST matches underlined) | >73-K021949-022-620-A10-8409 TTCAGACAAACTTAAAACCAAGCCAAGCTATGGGATCCTCCCTATAGTGAGAGCCAGTAC ATCCGACATCTTGGCAGACGTAATGATCTGAACGATGTGCTAGGGAGAGTCGGGGGGGGG GGGCAGATCATAATCAAAACATTTTGTGATGGGAACCGCCTGATATAGAGAGAAGCCGAA AAGACCATAAAAAATAATATAAGTA |
GenBank Accession | FR813379 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:17034074 - go to primer design |
BLAST e Value | 6e-08 |
Hit Clone Code (BAC ID) | K16E1 |
Hit Gene Code | At5g42590 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | cytochrome P450, family 71, subfamily A, polypeptide 16 |
Insertion Classification | Promoter |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |