SimpleSearch - Line and FST details


Line specific information

 
Line ID 635C09
Vector Used pAC161
Line Availability available as T3 set from NASC (N460897)
Segregation Analysis 50:35:29
Confirmed for Hit At2g01580 At1g72370
Parent of DUPLO pair 3208
Parent of pair(s) none

Gene hit At2g01580

 
Sequence (A. th genome BLAST matches underlined) 
>67-K023806-022-635-C09-8409
ACACTTCGTCCGTTTCTTTGCTGATCAAAGGGTTGATGGCTATGAGATCCTCCCTATTTC
GTAACGGTCTAACCTATTACTCGATGACAAGGTCGCTTATAACTCCTGCTATGGGATCCT
CCCTATAGTGAGTTTAATCCCAACCAGCAGCTGGTGCCCCTGAGGGTGGCGCGGCAGCTT
CCCATCCACCATCTGCCGGTGCAGCTATGGGATCCTCCCTATAGTGAGTCGGAATACNCG
AGGCCCTACAAAAAAGGGGTTTTAAGATAAACTTCTGCATATATGGACAAGAATATCCCC
TTCACAAAGATACTCTTTTCATCTTCAGATTGAGTGAGATTTAAGCCAAAATATAGACTC
GTATACGTAAATACTGACGAGATGACCCATTCGTCCCGGGAGAGCCCTTAGATTATCCCA
CCCCATCCACCCCTATACGTCAATACTGAAAGATTTGAGCACCCATTCTATGTACCC
GenBank Accession BX892972 [GenBank]
Graphic View Graphic view of gene At2g01580
Predicted Position of Insertion Chr2:265417 - go to primer design
BLAST e Value 2e-10
Hit Clone Code (BAC ID) F2I9
Hit Gene Code At2g01580 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g72370

 
Sequence (A. th genome BLAST matches underlined) 
>67-K023806-022-635-C09-8409
ACACTTCGTCCGTTTCTTTGCTGATCAAAGGGTTGATGGCTATGAGATCCTCCCTATTTC
GTAACGGTCTAACCTATTACTCGATGACAAGGTCGCTTATAACTCCTGCTATGGGATCCT
CCCTATAGTGAGTTTAATCCCAACCAGCAGCTGGTGCCCCTGAGGGTGGCGCGGCAGCTT
CCCATCCACCATCTGCCGGTGCAGCTATGGGATCCTCCCTATAGTGAGTCGGAATACNCG
AGGCCCTACAAAAAAGGGGTTTTAAGATAAACTTCTGCATATATGGACAAGAATATCCCC
TTCACAAAGATACTCTTTTCATCTTCAGATTGAGTGAGATTTAAGCCAAAATATAGACTC
GTATACGTAAATACTGACGAGATGACCCATTCGTCCCGGGAGAGCCCTTAGATTATCCCA
CCCCATCCACCCCTATACGTCAATACTGAAAGATTTGAGCACCCATTCTATGTACCC
GenBank Accession BX892972 [GenBank]
Graphic View Graphic view of gene At1g72370
Predicted Position of Insertion Chr1:27243029 - go to primer design
BLAST e Value 2e-32
Hit Clone Code (BAC ID) T10D10
Hit Gene Code At1g72370 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 40s ribosomal protein SA
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX892972 [GenBank]


Last Updated on 10.06.2021 13:37