SimpleSearch - Line and FST details
Line specific information
Line ID | 822A07 |
Vector Used | pAC106 |
Line Availability | available as T3 set from NASC (N769358) |
Segregation Analysis | N/A (line seemingly not resistant, T2 plants grown without drug) |
Confirmed for Hit | At3g10910 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g49430
Sequence (A. th genome BLAST matches underlined) | >49-K025507-022-822-A07-8409 CACCGGGCATGCACGCAACACCATCTCAAAATATTTGAACGCACGATATAGATCCTCCCT ATTCTGAGACATCGCAAACTATTTGAACTCTCGTATGGTATCCTCCTTTTAATTAGGATT TTTTTTTTATTGTATAAAGAAACTGATGCTGGCATTGTGCATGTGCTTTGTTCAATCCTG ATTCTGTATTGAAATGTTTTGATTTAATTTGCGTTTGGATTCTTTGGTGATTAAAAATGG GGCAATTCTAATTTAGGGTTTTTGTTTTTTTGAT |
GenBank Accession | CR360630 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:20046655 - go to primer design |
BLAST e Value | 4e-58 |
Hit Clone Code (BAC ID) | K7J8 |
Hit Gene Code | At5g49430 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | WD40/YVTN repeat and Bromo-WDR9-I-like domain-containing protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | unknown |
Gene hit At3g10910
Sequence (A. th genome BLAST matches underlined) | >49-K025530-022-822-A07-8409 AGCCATTTACAATTGAATATATCCTGAGAACACTCAAGACTTTGCTAATTTCTTACGTTT TATTAGCTTAGCATAATTAGACTAATTGCTAGATACAGAGCCTAGTGAACACATCTTTGG CGAAGGTCCATACACCATGTAAACAACCATGTCCTCGTCCCGCCGGCAAACAACCATCGG CGAACGCTGCTCAAGGAGTAGCGATTGTCTACAAGTGGGGCAAGAGGAACGTGAGAGCAA CCAAGTATCGATGCACCTCACGTGGAAGCCATGGTTACATTTAGGTAAAACCCTAACTTT TTCTCCATCTTCGAAATCTCCCAGACAGATCAAACACTCCGTAGCTTTCATGTCTATGAT TCCTGATCCGTATGGGATCCTCCCCATAGTGA |
GenBank Accession | CR360631 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:3412974 - go to primer design |
BLAST e Value | 6e-119 |
Hit Clone Code (BAC ID) | T7M13 |
Hit Gene Code | At3g10910 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | RING/U-box superfamily protein |
Insertion Classification | TS2TE (3') |
Confirmation Status | confirmed, show confirmation sequences |