SimpleSearch - Line and FST details
Line specific information
Line ID | 905C02 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N486810) |
Segregation Analysis | 50:47:47 |
Confirmed for Hit | At5g03270 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g03270
Sequence (A. th genome BLAST matches underlined) | >11-K030282-022-905-C02-8409 CGATTTAGGTACCCACCTTATATCTGTAAGATTTATATTTCTGAGCAGACATTAAAAGAT CGTAATATGAGTTGCAAAATGTTGTTTTTCTTTTTTGGCTACAGCGGATATATTATCCTC TTCAATCTTATGACAGAGCCATAGAGGCAATCAATGTGA |
GenBank Accession | CR936087 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:783140 - go to primer design |
BLAST e Value | 5e-30 |
Hit Clone Code (BAC ID) | F15A17 |
Hit Gene Code | At5g03270 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | lysine decarboxylase family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit T3P01
Sequence (A. th genome BLAST matches underlined) | >11-K114033-0022-905-C02-8409 AATGATGAGAAATCATATAGAATACTCATGAATGATACAATGCTCGCCTGCCCGGCCTCT ACGGCCGCTATGCGGTTTTTCTTGTTTACCCACAGGGGGCTTTGTAACTTCACCGGCCCG GGCGTAAAAATACTCTTTATCTCTTTACTTATGCTATATTATCGTTTACCTGCGTTTATG TCTTTGACCATGCTGTCTGAGTAATGACTTATAATTCTTAGGGATGGGATACAGTAGTTG TGTAATCCGTAGTCTGTAGAATGGTTAAATTTTANAATTGATTGAATCCCTTTAGGACTA ACCTGCCCTACCGCTA |
GenBank Accession | HE665718 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:11331470 - go to primer design |
BLAST e Value | 1e-72 |
Hit Clone Code (BAC ID) | T3P01 |
Insertion Classification | Genome Hit |
Confirmation Status | unknown |
Last Updated on 10.06.2021 13:37 |