SimpleSearch - Line and FST details
Line specific information
| Line ID | 048E04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404564) |
| Segregation Analysis | 50:50:37 |
| Confirmed for Hit | At5g43175 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At4g23270
| Sequence (A. th genome BLAST matches underlined) | >29-K016077-022-048-E04-8409 TGATCTGTAATTTCCCGGACTGAAGCCATTTACATTGAATATTTAGATAAAAGATTCTTT TCTGACAAATAATATCTTATCATATCCAACTAAGTTAGGCTGTTTTTTTTCCTTTAATTC CTGACAAATAGTTTATTGTAATTTAGAAATCGTAACTACTCTCTCTTTGTCTTTTTTTAA TAATAGTTATTATTTTGCGCGATACAAGTTTGACATTACAAAATAAAATAAAATAAAACC GGCGTTTACTAAGACTTGTTGGTCTCATAGAAAAAAGGGAAAAATATAGTTCTATGGGAT CCTCCCCTATAGTGAGAANNNNNANNNGNNNNNTNTCCTNNTTTTTTTTTATNTAAATAG GTGCTGATGGTCTACACTCTTATTAAAAGANNNANCTNCNTTGCAAAATTTCCAACCCCG ACAACACTGTTTGGTAAGGAAAAATGGAAAAACAGAGTTTAGGTAAGAGTTTTACATGGG TTCTTGCAGTACAAGAAACGATCAATACTCCAACAAGAAGAAAAGGCGTTACCTTGATTT TAAGCTGCAGGAACTTCGCGCGATGGGACAGAATCTTCAAGCTTTGTGCTTATATCCACC TTTG |
| GenBank Accession | AL936382 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:12170833 - go to primer design |
| BLAST e Value | 9e-76 |
| Hit Clone Code (BAC ID) | F21P8 |
| Hit Gene Code | At4g23270 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cysteine-rich RLK (RECEPTOR-like protein kinase) 19 |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At5g43175
| Sequence (A. th genome BLAST matches underlined) | >29-K016082-022-048-E04-8409 TTTCCCGGACTGAAGCCTTTACATTGAATTGATATCTAAATAAATATTGGTAGTCCTTAA AATAATATTTATGACTTTCAGGTACATCTTAAAAGAAGATTAAAATTAAAATGCTGTTAG TCCAAATTGTCTTTAGCATATAATAATTACAAAAAGAGTGTCAAGTTCATAGAACGCAAT AGACAGAAAAATTGAACAACTCAAACAAAAAATAACCATAATCATGAATATAGAACGAGA AAAAAAACAAGTACTGTAAGTTATGTTATTCCAATGATTTTGTCTTAAATAAGCCGAGAC AAAAGATTGTGATGTAGTCCCATATTCAGACCATTGTGAGCAAGAGGTGCATACATCCAT AGATCTTCTGAACTCAAGAGCTACATTGCAAAATTTCCAAAAACGACAAAAGTGTTTGGT TAGGAAAAATGGTAAAACAGAGTTTAGGTAAGAGTTTTACATGGTTTCTTGCAGTACAAG AAACGATCAATACTCCAACAAGAAAAAAAGTCGTTACCTTGATTTGAAGCTGCAGGAACT TCACGTAATGGACAGCATCTTCCAGCATTGTGCTTATATCGACCTTTGTCCCATTAGGAA CTAGGCTCTGCAAGGTCTTTAGCCTATCGTTTATCCTTTCTCTTCGTTTCTGCAACATTC ATCAACATTATTATTCCACAAAACCTAAAAACTCAAATCAACAATGAAAATATTTGTTTA GGTTATCTTGATTACC |
| GenBank Accession | AL936383 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17335496 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MMG4 |
| Hit Gene Code | At5g43175 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| Insertion Classification | 3' region |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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