DUPLOdb - Line and FST details


Line specific information

 
Line ID SALK_112206
Line Availability available from NASC (N612206) and ABRC (SALK_112206)
Confirmed for Hit At4g02880 At5g62540
Parent of DUPLO pair 29
Parent of pair(s) 8081, 8084, 80882

Gene hit At4g02880

 
Sequence (A. th genome BLAST matches underlined) 
CTGGATCGTTACTCCGCTGCCCTGGCGTCTACATTCAGCCTGGGGCGAGTACCAGACAGC
CTGTGGTGAGTCGGATTAACCTGCAGACAATTTGGCTTTTACACTGAACTCACATCCTCT
TCCAATTAGATTTGGGAGTATCGCTGTTGTGAACGACACGTCTCGTGGTTCGCTGGCTGT
TGAAAATAGTGATGCCGAGTTGAGTGGTTCAAATCTTGTGGATGAGATATCAAAGCCGCT
CTTTGGCCGATCGAAATGCTGATCCAGAACTGGATGGTGCTGTTAGCTCTGTTGGTAACC
GATCTACCCAGGGATGCAGCATGGTCCACCTTGAGCAGATCATTGTCGATGCCCCCAGTA
ACGAGGTATGCCAGTGTATATTTTGGACATTCTTTTCATTCCGGGAAATAATTAGCCGCC
CCGGGGCGTC
GenBank Accession CC457778 [GenBank]
Graphic View Graphic view of gene At4g02880
Predicted Position of Insertion Chr4:1276119 - go to primer design
BLAST e Value 1e-116
Hit Clone Code (BAC ID) T5J8
Hit Gene Code At4g02880 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ELKS/Rab6-interacting/CAST family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g62540

 
Sequence (A. th genome BLAST matches underlined) 
GCTGGTGAGTCAGGGTTTGGGTCACAGAGCAAAGACTGTAAAACAAAAGGTCTTGGTTTA
GTTCATGCATAACCTCCACAATGCAAAAGATACAAATGAAGAATTGCAGCCCGGCCCGCT
CCGACCAAAAA
GenBank Accession queueing for submission to ENA/GenBank
Graphic View Graphic view of gene At5g62540
Predicted Position of Insertion Chr5:25105377 - go to primer design
BLAST e Value 2e-53
Hit Clone Code (BAC ID) K19B1
Hit Gene Code At5g62540 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ubiquitin-conjugating enzyme 3
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on Thursday, 10 June 2021 13:37