DUPLOdb - Line and FST details
Line specific information
Line ID | SALK_112206 |
Line Availability | available from NASC (N612206) and ABRC (SALK_112206) |
Confirmed for Hit | At4g02880 At5g62540 |
Parent of DUPLO pair | 29 |
Parent of pair(s) | 8081, 8084, 80882 |
Gene hit At4g02880
Sequence (A. th genome BLAST matches underlined) | CTGGATCGTTACTCCGCTGCCCTGGCGTCTACATTCAGCCTGGGGCGAGTACCAGACAGC CTGTGGTGAGTCGGATTAACCTGCAGACAATTTGGCTTTTACACTGAACTCACATCCTCT TCCAATTAGATTTGGGAGTATCGCTGTTGTGAACGACACGTCTCGTGGTTCGCTGGCTGT TGAAAATAGTGATGCCGAGTTGAGTGGTTCAAATCTTGTGGATGAGATATCAAAGCCGCT CTTTGGCCGATCGAAATGCTGATCCAGAACTGGATGGTGCTGTTAGCTCTGTTGGTAACC GATCTACCCAGGGATGCAGCATGGTCCACCTTGAGCAGATCATTGTCGATGCCCCCAGTA ACGAGGTATGCCAGTGTATATTTTGGACATTCTTTTCATTCCGGGAAATAATTAGCCGCC CCGGGGCGTC |
GenBank Accession | CC457778 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:1276119 - go to primer design |
BLAST e Value | 1e-116 |
Hit Clone Code (BAC ID) | T5J8 |
Hit Gene Code | At4g02880 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | ELKS/Rab6-interacting/CAST family protein |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Gene hit At5g62540
Sequence (A. th genome BLAST matches underlined) | GCTGGTGAGTCAGGGTTTGGGTCACAGAGCAAAGACTGTAAAACAAAAGGTCTTGGTTTA GTTCATGCATAACCTCCACAATGCAAAAGATACAAATGAAGAATTGCAGCCCGGCCCGCT CCGACCAAAAA |
GenBank Accession | queueing for submission to ENA/GenBank |
Graphic View | |
Predicted Position of Insertion | Chr5:25105377 - go to primer design |
BLAST e Value | 2e-53 |
Hit Clone Code (BAC ID) | K19B1 |
Hit Gene Code | At5g62540 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | ubiquitin-conjugating enzyme 3 |
Insertion Classification | CDSi |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on Thursday, 10 June 2021 13:37 |