GABI DUPLOdb - pair details


Details for pair 2446
  
  Pair Info Parent 1 Parent 2
Pair ID 2446    
Parent loci   At5g61590 [Araport] [TAIR] At5g07580 [Araport] [TAIR]
Gene Annotations   Integrase-type DNA-binding superfamily protein Integrase-type DNA-binding superfamily protein;
Pair-related paper(s)  
Similarity (TAIRv10) 59.2 %    
Gap (TAIRv10) 28.5 %    
Component 1    
Genetically unlinked Yes    
Assigned allele   SALK_015182c / At5g61590 172B09 / At5g07580
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At5g61590 Graphic view of gene At5g07580
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 2446/1b4.11.26
NASC set ID N2102869
Assigned allele   SALK_015182c 172B09
Allele genotype in parent1   Hom  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11