SimpleSearch - Line and FST details
Line specific information
| Line ID | 041A02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403842) |
| Segregation Analysis | 100:98:91 |
| Confirmed for Hit | F24M12 At3g51060 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit F24M12
| Sequence (A. th genome BLAST matches underlined) | >09-K015226-022-041-A02-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAAGCACTTTAGTAGTA CTATTATCAAAAAGATAATGCAGTAACATAGGGCACCTCAACAAAATCGTACGTTTGTCT CTATGCCCGTGCCGTGAGCATCATGGATCCTAATTTAACTAATCATTATAATTAGCTGAG TATTTTTTTAGGTATTATCCTTTGAATTGCCTGAGAATAACGGCACGAAAAAATATGTCC CGATAAATCCGAAATCTATGGGATCCTCCCTTTAGGTGAGANGNNCTNATCTTNCGGGTC CGGACTTATTCCTTCCGAGGATTATGTGGACCTTGGCTGGCCTATCCTATTCCACTTCGG ACCTGTGAGCTGCCCCACTAAGGTTAGAGAACATAGCAGAGAGATACGCCCTATAGCGCG TAAGAACCATTTTAGTAGCTTGCCACATCTCTCTATCATAAGATCAGACTACTCTTCACC AGCCCTCTTAATTATCTAAGAAAGTCTCAATGGAAAACTCAGCACTAAGCAACTGTGTGA GGCGAACAAATTTCTCTAATCAACAGAGAACTATGCAAGAGGGTCTA |
| GenBank Accession | AL763808 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:18963258 - go to primer design |
| BLAST e Value | 7e-61 |
| Hit Clone Code (BAC ID) | F24M12 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g51060
| Sequence (A. th genome BLAST matches underlined) | >09-K015219-022-041-A02-8409 NTGATCCATGTAGAATTTCCCGGGACATGAAGCCTTTACAATTATTGGAAGCAATGATTT AAATCTCTCTTCTTCTTCTTCCTTCTTACATATCTCTGTGTGTTTCTTAAATACTCTCTC TCTCGTACCGACAAACAAGTTTTGCTTTTTCATCAGAGTCTCAAAAAGCTATTCCAACTT CAATACACTACAAACCCAGAGAATGAATTCAACCTAAAAACCCTATGGGATCCTCCCTGT AAGTGAG |
| GenBank Accession | AL763807 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:18964297 - go to primer design |
| BLAST e Value | 4e-50 |
| Hit Clone Code (BAC ID) | F24M12 |
| Hit Gene Code | At3g51060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Lateral root primordium (LRP) protein-like protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
Gene hit K10D20
| Sequence (A. th genome BLAST matches underlined) | >09-K015226-022-041-A02-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAAGCACTTTAGTAGTA CTATTATCAAAAAGATAATGCAGTAACATAGGGCACCTCAACAAAATCGTACGTTTGTCT CTATGCCCGTGCCGTGAGCATCATGGATCCTAATTTAACTAATCATTATAATTAGCTGAG TATTTTTTTAGGTATTATCCTTTGAATTGCCTGAGAATAACGGCACGAAAAAATATGTCC CGATAAATCCGAAATCTATGGGATCCTCCCTTTAGGTGAGANGNNCTNATCTTNCGGGTC CGGACTTATTCCTTCCGAGGATTATGTGGACCTTGGCTGGCCTATCCTATTCCACTTCGG ACCTGTGAGCTGCCCCACTAAGGTTAGAGAACATAGCAGAGAGATACGCCCTATAGCGCG TAAGAACCATTTTAGTAGCTTGCCACATCTCTCTATCATAAGATCAGACTACTCTTCACC AGCCCTCTTAATTATCTAAGAAAGTCTCAATGGAAAACTCAGCACTAAGCAACTGTGTGA GGCGAACAAATTTCTCTAATCAACAGAGAACTATGCAAGAGGGTCTA |
| GenBank Accession | AL763808 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:7179689 - go to primer design |
| BLAST e Value | 4e-75 |
| Hit Clone Code (BAC ID) | K10D20 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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