SimpleSearch - Line and FST details
Line specific information
Line ID | 445E03 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N442675) |
Segregation Analysis | 60:40:29 |
Confirmed for Hit | At5g52600 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit F16L1
Sequence (A. th genome BLAST matches underlined) | >21-K023516-022-445-E03-8409 AATTTGGAGTATAATCTCGCACAGAAGCATTTACAATTGAATATATCCTGTAGCTGACGC TAGAAGGGTTATGAGTGTACACGTGTGTGTTTTTGACCTCTTGACTTTGAATGATCTTAC TATGGGATCCTCCCTATAGTGAGACGTATTACTCACGGGATTAGCCAGAAATGGTAGATT CATGGGAACAACGCTGTGGGGGGGCCCATGGAAGGCGGAATATTGGGGGCGCGGGGGATA CATGCGACTGTGCGTTGTTTTAATGCAAAAGAAAAATAGAAGACTTGAAAGTCGGTGGCT CAGAGGTGTAAGTCGGGACCAAATGTTGAGAATAAGAGGAACAAATATGCCGTCATACGC CAAGCAATGATTAGGAAACGTACAAGAAAAGGGGAAGGTATGGTGCAAGAGAATAACAAT TGTAATAGAGCGAGTAGAAAAGGAAGAGAGAGAGGGGGAACGGGAGAATAAGGTTAGTAA AAGTTATAGACTGCAGGAGGCAGCGTATATAATTTTTTAAATAAATTAGGCGCGCGGGCC CCAGAAGGATATGTAAATTAGTATGTAAAATTAATAAAA |
GenBank Accession | BX891056 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr1:7832735 - go to primer design |
BLAST e Value | 3e-10 |
Hit Clone Code (BAC ID) | F16L1 |
Insertion Classification | Genome Hit |
Confirmation Status | unknown |
Gene hit At5g52600
Sequence (A. th genome BLAST matches underlined) | >52-K033041-022-445-E03C-3144 TCCACATCCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGACA GGGTACCCGGGGATCAGATTTCCCGAACGGATGTGAGGACGACGTTGTTGCTGTGGTGGG CCTTTTTCTACATTTACATTTTTTCTTTTTCTCTTCAATAATTTTAGTAGATAGTCCCCA CATGTAAGAGTTAAAGTTGGAAACCTCAAACTTTTTGTGTATATAGTTAATAAACAGCCT CACTCACTTGCAAAACTGTGGAAGAAAAAATAAAAGATGGAATGCAAAAGAGAAGAAGGG AAGTCTTACGTGAAGAGAGGGTTGTGGAAACCAGAAGAAGATATGATATTAAAAAGCTAT GTTGAGACTCATGGTGAAGGAAACTGGGCAGACATTTCTCGTAGATCCGGTTCGATTTCC AAATTTTTGTGTTTACTAGTAAAGGGGAGATGGGATTTTGGGACATTAAAGAATTTGTGT TTCTGCATGATGTTTTTTTCAGGGTTGAAGAGAGGAGGAAAAAGCTGTAGGCTGAGATGG AAGAACTATCTAAGACCAAATATCAAAAGAGGAAGCATGTCACCACAAGAACAAGACCTT ATCATCCGCATGCATAAGCTTCTTGGAAACAGGTCTTTCCT |
GenBank Accession | HG968978 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:21344101 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | F6N7 |
Hit Gene Code | At5g52600 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | myb domain protein 82 |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | BX891055 [GenBank] |
Last Updated on 10.06.2021 13:37 |