SimpleSearch - Line and FST details


Line specific information

 
Line ID 606B04
Vector Used pAC161
Line Availability available as T3 set from NASC (N458096)
Segregation Analysis 50:28:17
Confirmed for Hit At3g62090
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit K19P17

 
Sequence (A. th genome BLAST matches underlined) 
>26-K021192-022-606-B04-8409
ACCGCCACATCCCATTGTAGTAACAAGAAGAAAACTAAGGTATCTATGGGATCCTCCCTA
TAGTGAGCTACACTGACTTGGTAACTCCCATTTGGACGTGAATGTAAACACACTCTGGGA
CCTCCCCTATATTGAGATACAGGGAAATCCCCTTTCCCAATTCGACGTAATCCCCTCCCC
CTTATTCGACCTCTCCACCATCACCTACCAATGGGCACCCACCAATCTCTGCAGCGCCCT
CTCTACTATCTCCCCCAAATCTAAGCTACCCTCCCAATCTTGACCACGAAAGGGAGCACC
CCACAGTCTCCCTATAAGGGGGAGCACTTCGAATTCATTAAAAAAAGAAAGCGAATATAA
AATGAAAGTACATTTTGATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGC
AATAAACAAATTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAA
ATGGGAGCTACCATTTCAGTGN
GenBank Accession FR813102 [GenBank]
Graphic View Graphic view of sequence FR813102 of line 606B04
Predicted Position of Insertion Chr5:21901554 - go to primer design
BLAST e Value 6e-08
Hit Clone Code (BAC ID) K19P17
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g62090

 
Sequence (A. th genome BLAST matches underlined) 
>26-K021122-022-606-B04-8409
CACTCTTTGTCAATTTAGATGGTGCAACCTTACACAATAAATCAAGGACCCCTATACAGA
TGAAGGAATTCTCCCTGGTAAAAATCTGGAAACCCGTGAGCAGATGAAGTAAACAGTGAT
GATTGTTACCTGCGGATTCACGGTCTTCTTCTTCATGAGTTAGTCGTGAGAACACTATGG
CATCCTCCCTGTGATGCGTAGTAATACTCAGGAGCACTACAACGACATCAGAACAACTAC
CATGGAAGGATCTCCTCAAGGTTCTCTTTTTTAGTGCCGGCTTTTCTACGGGATGTTCCC
TATAGAGATAGGAATGGCCCC
GenBank Accession BX654373 [GenBank]
Graphic View Graphic view of gene At3g62090
Predicted Position of Insertion Chr3:22989158 - go to primer design
BLAST e Value 7e-100
Hit Clone Code (BAC ID) T17J13
Hit Gene Code At3g62090 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation phytochrome interacting factor 3-like 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX654373 [GenBank]


Last Updated on 10.06.2021 13:37