SimpleSearch database version information

GK release 24 (from 71239 lines with genome hits: 18908 gene hits, 13038 CDSi hits).
- Hit detection based on TAIRv10 pseudochromosome sequences and TAIRv10 annotation.
- New definition of "gene hits": insertion between transcription start and polyA addition site (TS2pA - but see Note3 below). Only if this information is not available in the annotation data, 300 bp upstream of ATG to 300 bp downstream of STOP are considered. This change reduces the number of "gene hits". CDSi hit: insertion between ATG to STOP (CDS plus introns).
- 56.3 % of all A. thaliana genes are hit (gene hits including TS2TE hits counted);
- 62.0 % of A. thaliana protein coding genes are hit (gene hits including TS2TE hits counted);
- 47.6 % of A. thaliana protein coding genes are hit (CDSi hits counted);
- 8646 lines had been sent to NASC on 2011-03-07. The current number of donated lines is presented here.
Note1: The TAIRv10 annotation dataset contains 33.602 genes in total, including 27.416 protein coding genes.

Note2: The GK release determines which lines and FSTs are available in SimpleSearch. If we produce new FSTs for our lines or even new lines, a new release is required to get these items into SimpleSearch. However, the data values for the items in the database are updated automatically once every 24 hrs from our internal LIMS (lab information managment system). This affects for example new segregation data, new NASC donations and NASC ID's, new confirmation sequences and so on. 

Note3: After the release 24 was made available, we changed the term TS2pA (from transcription start to polyA addition site) to TS2TE (from transcription start to transcript end) to also cover not polyadenylated ncRNA transcripts. 

GK release 23v2 (from 64244 lines with genome hits: 17016 gene hits, 12298 CDSi hits). 
- 6018 lines have been sent to NASC.

GK release 23 (from 64244 lines with genome hits: 17016 gene hits, 12298 CDSi hits).
- 5551 lines have been sent to NASC .

GK release 22 (from 64339 lines with genome hits: 17018 gene hits, 12301 CDSi hits).
- 4293 lines have been sent to NASC.

25.06.2006

GK release 21 (from 63812 lines with genome hits: 16939 gene hits, 12239 CDSi hits).
- 3509 lines have been sent to NASC.
- New search interface allows searching for line ID or FST GenBank accession number.
- Genetic segregation and confirmation sequencing data included.

20.04.2006

GK release 20 (from 63812 lines with genome hits: 16939 gene hits, 12239 CDSi hits).
- 2282 lines have been sent to NASC.

15.12.2005

GK release 19 (from 62697 lines with genome hits: 16804 gene hits, 12129 CDSi hits).
- 1751 lines have been sent to NASC.

15.09.2005

GK release 18 (from 62524 lines with genome hits: 16782 gene hits, 12112 CDSi hits).
- Information concerning lines transferred to NASC included (example: At2g31180).
- 712 lines have been sent to NASC.

01.02.2005

GK release 17 (from 61768 lines with genome hits: 16664 gene hits, 11987 CDSi hits).

15.09.2004

GK release 16 (from 60741 lines with genome hits: 16558 gene hits, 11883 CDSi hits).
- Hit detection based on TIGR sequence and BAC annotation v5.

01.05.2004

GK release 15 ** (from 60527 lines with genome hits: 17063 gene hits, 12304 CDSi hits).

15.03.2004

GK release 14 ** (from 55138 lines with genome hits: 16214 gene hits, 11560 CDSi hits).

01.02.2004

GK release 13 ** (from 52250 lines with genome hits: 15742 gene hits, 11127 CDSi hits).

15.12.2003

GK release 12 ** (from 47701 lines with genome hits: 14914 gene hits, 10425 CDSi hits).

05.10.2003

GK release 11 (from 44358 lines with genome hits: 14047 gene hits, 9726 CDSi hits).
- Hit detection based on MAtDB release version 11092003.

01.08.2003

GK release 10 (from 36486 lines with genome hits: 12470 gene hits, 8493 CDSi hits).

01.07.2003

GK release 9 (from 36206 lines with genome hits: 12382 gene hits, 8425 CDSi hits).

01.06.2003

GK release 8 (from 35302 lines with genome hits: 12191 gene hits, 8270 CDSi hits).

01.03.2003

GK release 7 (from 31734 lines with genome hits: 11350 gene hits, 7599 CDSi hits).

15.02.2003

GK release 6 (from 26375 lines with genome hits: 9862 gene hits, 6458 CDSi hits).
- New definition of "gene hits": insertion between 300 bp upstream of ATG to 300 bp downstream of stop. CDSi hit: insertion between ATG to stop (CDS plus introns).
- Hit detection based on MAtDB release version 11012003.

01.12.2002

GK release 5 (from 26350 lines with genome hits: 8230 gene hits, old definition).

01.10.2002

GK release 4 (from 24138 lines with genome hits: 7635 gene hits, old definition).
- Hit detection based on MAtDB release version 17092002.

01.09.2002

GK release 3 (from 22825 lines with genome hits: 7200 gene hits, old definition).
- A new page show the genes and FSTs graphically, search result page rearranged.

01.08.2002

GK release 2 (from 17767 lines with genome hits: 5835 gene hits, old definition).
- Hit detection based on MAtDB release version 26072002.

01.06.2002

Opening of the GABI-Kat homepage.
- GK release 1 (from 13531 lines with genome hits: 4642 gene hits, old definition).
- Hit detection based on MAtDB release version 11052002.