Sequences from confirmation amplicon


Confirmation sequences for line 048E04 and hit At5g43175 are shown.
Line ID 048E04
Locus At5g43175 [Araport] [TAIR] [MIPS] [SIGnAL]
Deduced position of insertion Chr5:17335496
Primers used for PCR LD06 - 8474, show primer details
   
Sequence Name 01-K027153-022-048-E04C-8409
GenBank Accession LN486431 [GenBank]
Sequencing primer T-DNA primer, 8409: 5'-ATATTGACCATCATACTCATTGC-3'
Sequence (A. th genome BLAST matches underlined)
>01-K027153-022-048-E04C-8409
GTAGATTTCCCGGACATGAAGCCATTTACAATTGAATTGATATCTAAATAAATATTGGTA
GTCCTTAAAATAATATTTATGACTTTCAGGTACATCTTAAAAGAAGATTAAAATTAAAAT
GCTGTTAGTCCAAATTGTCTTTAGCATATAATAATTACAAAAAGAGTGTCAAGTTCATAG
AACGCAATAGACAGAAAAATTGAACAACTCAAACAAAAAATAACCATAATCATGAATATA
GAACGAGAAAAAAAACAAGTACTGTAAGTTATGTTATTCCAATGATTTTGTCTTAAATAA
GCCGAGACAAAAGATTGTGATGTAGTCCCATATTCAGACCATTGTGAGCAAGAGGTGCAT
ACATCCATAGATCTTCTGAACTCAAGAGCTACATTGCAAAATTTCCAAAAACGACAAAAG
TGTTTGGTTAGGAAAAATGGTAAAACAGAGTTTAGGTAAGAGTTTTACATGGTTTCTTGC
AGTACAAGAAACGATCAATACTCCAACAAGAAAAAAAGTCGTTACCTTGATTTGAAGCTG
CAGGAACTTCACGTAATGGACAGCATCTTCCAGCATTGTGCTTATATCGACCTTTGTCCC
ATTAGGAACTAGGCTCTGC
   
Sequence Name 05-K027153-022-048-E04C-LD06
GenBank Accession LN488208 [GenBank]
Sequencing primer gene specific primer, LD06: 5'-GCTAAAGACATTGCAGAGCCTAGT-3'
Sequence (A. th genome BLAST matches underlined)
>05-K027153-022-048-E04C-LD06
CTAATGGGACAAAGGTCGATATAAGCACAATGCTGGAAGATGCTGTCCATTACGTGAAGT
TCCTGCAGCTTCAAATCAAGGTAACGACTTTTTTTCTTGTTGGAGTATTGATCGTTTCTT
GTACTGCAAGAAACCATGTAAAACTCTTACCTAAACTCTGTTTTACCATTTTTCCTAACC
AAACACTTTTGTCGTTTTTGGAAATTTTGCAATGTAGCTCTTGAGTTCAGAAGATCTATG
GATGTATGCACCTCTTGCTCACAATGGTCTGAATATGGGACTACATCACAATCTTTTGTC
TCGGCTTATTTAAGACAAAATCATTGGAATAACATAACTTACAGTACTTGTTTTTTTTCT
CGTTCTATATTCATGATTATGGTTATTTTTTGTTTGAGTTGTTCAATTTTTCTGTCTATT
GCGTTCTATGAACTTGACACTCTTTTTGTAATTATTATATGCTAAAGACAATTTGGACTA
ACAGCATTTTAATTTTAATCTTCTTTTAAGATGTACCTGAAAGTCATAAATATTATTTTA
AGGACTACCAATATTTATTTAGATATCAATTCAATTGTAAATGGCTTCATGTCCGGGAAA
TCTACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTAATTACC
AATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAAGTACAT
TTTGATAAAA

Last Updated on 06.12.2018 16:11