SimpleSearch - Line and FST details


Line specific information

 
Line ID 401A09
Vector Used pAC161
Line Availability available as T3 set from NASC (N438409)
Segregation Analysis 50:50:40
Confirmed for Hit At3g01360
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At3g01360

 
Sequence (A. th genome BLAST matches underlined) 
>65-K018291-022-401-A09-8409
TGATCTGAAATTTCCCGGACATGAAGCCATTTACTTAGGAAGCATGGCTATTTATCCATT
TCTGAAAAGGCGAAATGGCGTCACCGCGAGCGTCACGCGCATTCCGTTCTTGCTGTAAAG
CGTTGTTTGGTACACTTTTGACTATGGAAGCCTCCGTATGAGGAGTACCCTCTGTTAAGT
GCAGAGGGACTGAGTATATCTACTTGATTATCACGAACTGTCCCGCTCTAACACCTGTCG
GTGCTGATACTTTCTTCTACGATTCCTTCTTCTCCTTCGACCTATCCCGAGATCGGAGAA
GGATGAGATAAGATGGGCCTATGGAACAAGTGGTCACAAATACATTAGAGAGTACCACAT
CGACGAATGAAATTATGCTCTTCATGCAGAATGATACGATCTTACCTATCGGATACTCCG
TCAAAGTGAGCTGGGATGGAAGATGATCCCACTTATCTTGCTGGCAAAACTATGACCTGA
GCTCTAGGGGAAGATGATGCAGCGGTACCAGAAGATGAATTCGGATCCTGGTTCGATGAG
TCCAGTGACTCCCACGCGCCGATTACTGCATATTCCCCGCCGGCGACGGCTTATCTTAAT
ATACCCATGACTCCAATCTTCACATCCTCTGACGAACAGGCTATACTTCTTTCGAGGAAA
TTGGCATGTTTCCGGCCGTTAAAGCTTAACAGAATCGAGCTTCTGATCTGATAAACCGGA
AAGATCCAACCCGACCCAATAACCCCAAATGGGATAGGCTGAGTACCCAATAACTCAATA
TGGGCCTACTGGGGTCTCCACATAAGTTATGTTTAAATATCCCAAACCATCAGGGACCAT
CATGTGACCTCTATGGAAATCCTGCTGCTGCA
GenBank Accession FR809611 [GenBank]
Graphic View Graphic view of gene At3g01360
Predicted Position of Insertion Chr3:138556 - go to primer design
BLAST e Value 9e-119
Hit Clone Code (BAC ID) T13O15
Hit Gene Code At3g01360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation plant viral-response family protein (DUF716)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX287379 [GenBank]


Last Updated on 10.06.2021 13:37