SimpleSearch - Line and FST details
Line specific information
| Line ID | 055C04 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At4g09850
| Sequence (A. th genome BLAST matches underlined) | >27-K012426-022-055-C04-8409 TGATCCTGTAGATTTCCCGGACTGAAGCCTTTACATTGAATATTCCTGACTAGGATGTTA TCTAACCATGAACCAGTATGATGTGTTAGCCATACAGATTGGACAAATCCCTAAGCCTGG CCAGTCTATACCTTCTCTTACAGACACTTATTCACTCTGCTTAGAGAATAAACGCCTAGT GAGAAAGCGACTTATCGGCCCAAGACTCTAGCCTATCACGCCTATATTTAATATATGCAC ATCTGGCACCGATGATTACTTTATCTACACCCACATAACTTGCGTGCGTTGATTATACGA GCCCACCAGAGCTATGTGGCATACTCCGTATAGGAGACTAACNACTCAGNNNNTGCGCCT CTTGCCATCTTTTGGCTCTCATCTTCACAGGAAACAGTGGTAAGCCCTATGGGATCCTCC CTATGAGGAGCTCTATTACCGCCAATGAAACGCGACGACATCGTCGAATAGCGCCGATTA GATAATCAGAACCAACCGGCGGCAAACACAAACGTCAGAGCTGGCCTAACTCTGCTTATA GAAGCC |
| GenBank Accession | AL754692 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:6192496 - go to primer design |
| BLAST e Value | 7e-18 |
| Hit Clone Code (BAC ID) | F17A8 |
| Hit Gene Code | At4g09850 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At5g39740
| Sequence (A. th genome BLAST matches underlined) | >27-K012300-022-055-C04-8409 NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATGTCCTGACTGA GGTTGTTATCCTAAGCAAAGAACCTAGTATGATGTGTTGGCCATACGAGATTGGACAAAT CCACTAAGCACTGGCCAATTCTACACCTTTTACTTATAGACACTTATTACACTCTGCCTA AGAGTAAAGAACGCTTCAGGGAGAGAGGACTTATCGGCCCAAGACTATAGCCCATTACAG CTCTATATTTAAACTATGCACATCTGGACCGATGATATACTTTATCTACACCCACATAAC TTGTGTGCGTTGATTATAACGAGCCCACCAGAACTCTAGTGGGACTCCTCTCTATAGAGA GNNCTCNCATTANGTCTTTGCGCCTCTTGCCATCTTTTGTCACTCATCTTCACAGGAAAC AATGGTAAGCCCTATGGGATCCTCCCTATAGGGACACCCACTCTACCGGAAGAGCGCCCC ACGTGTCCCTATCGGGGCCTTCGGTTCATGTCGCAGATCATCCCGATTCCAGTCAAGATC TTTCTGAGCAGCACTAGTTTCCTGTCATTCTTGCACACATATCAGCCCCCTATGGTGTTC TTCTTTAAGGCCCCCGACACCCAACCACGACCCGGAAATCCACCCGACCCCACACTACGT ATTCTACACGCTGCGGGACTTAAAATAATCCGGTTCTCCGTTCGAACCCCCGGTGCCCTG CGACAGCTCCCCCCCTGCCCGCTCTCGGGTCCCGGAGCCAAGGTACCCCCGGGCGGCATA CACGTACTCGTCTCTCCGCTCTCGGCCTTTCCACACTAAATGTGTTCTATTCTTTCCATC TCACTTACTTTTCTTCCTACGGCCGTGTGCTACCACACCCCCCCCTCACGNCACGCCTCA CTCTCATAAGACCCACAGCTGCAACAGAGAAAACAACAGCACTCCCAATTTGCCCCCCTC CAAATTTAAAGCACACTTTCCTAACCCTACCAACAACAACAACA |
| GenBank Accession | AL754690 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:15903002 - go to primer design |
| BLAST e Value | 1e-28 |
| Hit Clone Code (BAC ID) | MIJ24 |
| Hit Gene Code | At5g39740 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ribosomal protein L5 B |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL754690 [GenBank] |
Gene hit MNC6
| Sequence (A. th genome BLAST matches underlined) | >27-K012296-022-055-C04-35St TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTGAATATATTGAATATATTCAATTGTAAATGGCTTCATGTCC GGGAAATCTACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTA ATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAA GTACATTTTGATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAAC AAATTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGG CTTAGATGAGAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCA TCTTCAGATTGGTCTGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGT TTGAGCTACCAATTCAGTGTAGCCCA |
| GenBank Accession | FR801845 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:21768086 - go to primer design |
| BLAST e Value | 0.39 |
| Hit Clone Code (BAC ID) | MNC6 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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