SimpleSearch - Line and FST details


Line specific information

 
Line ID 055C04
Vector Used pAC161
Line Availability not available
Segregation Analysis unknown
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At4g09850

 
Sequence (A. th genome BLAST matches underlined)
>27-K012426-022-055-C04-8409
TGATCCTGTAGATTTCCCGGACTGAAGCCTTTACATTGAATATTCCTGACTAGGATGTTA
TCTAACCATGAACCAGTATGATGTGTTAGCCATACAGATTGGACAAATCCCTAAGCCTGG
CCAGTCTATACCTTCTCTTACAGACACTTATTCACTCTGCTTAGAGAATAAACGCCTAGT
GAGAAAGCGACTTATCGGCCCAAGACTCTAGCCTATCACGCCTATATTTAATATATGCAC
ATCTGGCACCGATGATTACTTTATCTACACCCACATAACTTGCGTGCGTTGATTATACGA
GCCCACCAGAGCTATGTGGCATACTCCGTATAGGAGACTAACNACTCAGNNNNTGCGCCT
CTTGCCATCTTTTGGCTCTCATCTTCACAGGAAACAGTGGTAAGCCCTATGGGATCCTCC
CTATGAGGAGCTCTATTACCGCCAATGAAACGCGACGACATCGTCGAATAGCGCCGATTA
GATAATCAGAACCAACCGGCGGCAAACACAAACGTCAGAGCTGGCCTAACTCTGCTTATA
GAAGCC
GenBank Accession AL754692 [GenBank]
Graphic View Graphic view of gene At4g09850
Predicted Position of Insertion Chr4:6192496 - go to primer design
BLAST e Value 7e-18
Hit Clone Code (BAC ID) F17A8
Hit Gene Code At4g09850 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At5g39740

 
Sequence (A. th genome BLAST matches underlined)
>27-K012300-022-055-C04-8409
NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATGTCCTGACTGA
GGTTGTTATCCTAAGCAAAGAACCTAGTATGATGTGTTGGCCATACGAGATTGGACAAAT
CCACTAAGCACTGGCCAATTCTACACCTTTTACTTATAGACACTTATTACACTCTGCCTA
AGAGTAAAGAACGCTTCAGGGAGAGAGGACTTATCGGCCCAAGACTATAGCCCATTACAG
CTCTATATTTAAACTATGCACATCTGGACCGATGATATACTTTATCTACACCCACATAAC
TTGTGTGCGTTGATTATAACGAGCCCACCAGAACTCTAGTGGGACTCCTCTCTATAGAGA
GNNCTCNCATTANGTCTTTGCGCCTCTTGCCATCTTTTGTCACTCATCTTCACAGGAAAC
AATGGTAAGCCCTATGGGATCCTCCCTATAGGGACACCCACTCTACCGGAAGAGCGCCCC
ACGTGTCCCTATCGGGGCCTTCGGTTCATGTCGCAGATCATCCCGATTCCAGTCAAGATC
TTTCTGAGCAGCACTAGTTTCCTGTCATTCTTGCACACATATCAGCCCCCTATGGTGTTC
TTCTTTAAGGCCCCCGACACCCAACCACGACCCGGAAATCCACCCGACCCCACACTACGT
ATTCTACACGCTGCGGGACTTAAAATAATCCGGTTCTCCGTTCGAACCCCCGGTGCCCTG
CGACAGCTCCCCCCCTGCCCGCTCTCGGGTCCCGGAGCCAAGGTACCCCCGGGCGGCATA
CACGTACTCGTCTCTCCGCTCTCGGCCTTTCCACACTAAATGTGTTCTATTCTTTCCATC
TCACTTACTTTTCTTCCTACGGCCGTGTGCTACCACACCCCCCCCTCACGNCACGCCTCA
CTCTCATAAGACCCACAGCTGCAACAGAGAAAACAACAGCACTCCCAATTTGCCCCCCTC
CAAATTTAAAGCACACTTTCCTAACCCTACCAACAACAACAACA
GenBank Accession AL754690 [GenBank]
Graphic View Graphic view of gene At5g39740
Predicted Position of Insertion Chr5:15903002 - go to primer design
BLAST e Value 1e-28
Hit Clone Code (BAC ID) MIJ24
Hit Gene Code At5g39740 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ribosomal protein L5 B
Insertion Classification Promoter
Confirmation Status unknown
Other FSTs Supporting this Hit AL754690 [GenBank]

Gene hit MNC6

 
Sequence (A. th genome BLAST matches underlined)
>27-K012296-022-055-C04-35St
TGACGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTTTGAATATATTGAATATATTCAATTGTAAATGGCTTCATGTCC
GGGAAATCTACATGGATCAGCAATGAGTATGATGGTCAATATGGAGAAAAAGAAAGAGTA
ATTACCAATTTTTTTTCAATTCAAAAATGTAGATGTCCGCAGCGTTATTATAAAATGAAA
GTACATTTTGATAAAACGACAAATTACGATCCGTCGTATTTATAGGCGAAAGCAATAAAC
AAATTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGTCCAAATGGGGG
CTTAGATGAGAAACTTCACGATCGATGCCTTGATTTCGCCATTCCCAGATACCCATTTCA
TCTTCAGATTGGTCTGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGT
TTGAGCTACCAATTCAGTGTAGCCCA
GenBank Accession FR801845 [GenBank]
Graphic View Graphic view of sequence FR801845 of line 055C04
Predicted Position of Insertion Chr5:21768086 - go to primer design
BLAST e Value 0.39
Hit Clone Code (BAC ID) MNC6
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37