SimpleSearch - Line and FST details


Line specific information

 
Line ID 098D11
Vector Used pAC161
Line Availability not available
Segregation Analysis unknown
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit F17I14

 
Sequence (A. th genome BLAST matches underlined) 
>098D11-LB-5-3045627-R-150-a
ACAATAAAAAAAAAAAATCAATGAGAATGATGCATTGGAGAAAACGTGTATGAACAGATG
GTCGGTAAAAAAAAAAAAAAAAACGTGTATGAACAGATGGTCGGTAATTAGCACGAAAAT
CGCTTTGGTTGTAATTTGTAATAGTACTAT
GenBank Accession KG781239 [GenBank]
Graphic View Graphic view of sequence KG781239 of line 098D11
Predicted Position of Insertion Chr5:3045627 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) F17I14
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit KG781239 [GenBank]

Gene hit MYH9

 
Sequence (A. th genome BLAST matches underlined) 
>84-012075-strizhov-D11-8409
NTGATCCATGTANGATTTCCCGGACATGAAGCACTTTACACTTGAATATATCCGGACAGA
AATAGTCAATAAAAACTACAATGCGAATGCCGCATTGCACATGTCCTGCTAAAACGAAGA
GACGGGCAAGTGACCAGCTGCTCTCCTGCGCCACATTCTGTGTTTGACAAAACGGCTAAA
TGGAATATTCACATTTCAAACCGTTAGAAGCTTTCAAACTGTTTTTTACCTACACGTGCG
CAATTGACTCCACTTATCTTTTTAACCTAGCCAAATGATTTCTTTCCTCCTATTTGTCAA
CATACAATGTCTCGCTGTACGTATAATGATATGTGGAGTCTATTACATTATGACAGTGGT
TCTTTAACTATGGCATCCTACCTATAGTGGTCNACTTAACTCANNNNNNNGNNNTNCNNN
GNNGNTNNCGGATNTTACCCTTTGTTGANNNGTCTCNNTTGCCCTTTGGTCTTCTGACAC
TGGGTCTTTGATCTTTTTGGAGTAGACAAGCGTGTCGTGCTCCACCCTGTTGACGAAAAT
TTTCTTCTTGTCATTGAGTCGGAAGAGACTCTGGATGAACTGTTCGCCAGGCTTTACCGC
GAGTTCTGGTAGGCCCTCTATTTGAATCTTTGACCTCCTGGGAATTGGGGGAACCTCTA
GenBank Accession FR802909 [GenBank]
Graphic View Graphic view of sequence FR802909 of line 098D11
Predicted Position of Insertion Chr5:3055068 - go to primer design
BLAST e Value 2e-05
Hit Clone Code (BAC ID) MYH9
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit FR802909 [GenBank]

Gene hit At5g09810

 
Sequence (A. th genome BLAST matches underlined) 
>098D11-LB-5-3051981-R-150-a
CTCAAAACAATCTAACGGCAACATAGACGCGTCGGTGAGCTAAAAAGAGTGTGAAAGCCA
GGTCACCATAGCATTGTCTCTCCCAGATTTTTTATTTGGGAAATAATAGAAGAAATAGAA
AAAAATAAAAGAGTGAGAAAAATCGTAGAG
GenBank Accession KG781237 [GenBank]
Graphic View Graphic view of gene At5g09810
Predicted Position of Insertion Chr5:3051981 - go to primer design
BLAST e Value 3e-80
Hit Clone Code (BAC ID) MYH9
Hit Gene Code At5g09810 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation actin 7
Insertion Classification Promoter
Confirmation Status unknown


Last Updated on 10.06.2021 13:37