SimpleSearch - Line and FST details
Line specific information
| Line ID | 343G02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432906) |
| Segregation Analysis | 100:100:98 |
| Confirmed for Hit | At1g13560 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At1g13560
| Sequence (A. th genome BLAST matches underlined) | >15-K016155-022-343-G02-8409 TGATCTGTAGATTTCCCGGACTGAAGCCATTTACATTGCTTATCTACTAAAGTAATATGA GCCATAAGTAAACAAACCTGCTATGGGATCCTCCCTATAGTGAGATTTGCCCAATGCATA GATCCAAAAACAAGAACATTATACAAAGTTCTACATAACTTCACCTATCCTGATCAAACA GACAACAATGAATAAGAAGAAGAAATACATCACCGATCCAACTGGTCCATATCGACCATT CGCAGTGTCAAAGGTTTCTTTTCAAGCTTCTTTACGCGTGATCCTGTGGATTAGAAACCA GAGATATGTACATTAATTCATTATGCTTTCAAAACAAGAATTTCGATCTTCTTTATCTAA ATTTTCACCTAAAGCAGTAGATTCCAAGGGCCTCAGTGATCTCATGGATGACTGATGTTG CAAAGTGCAAGTATAATGACACTGTTTTGCATCAATACAACATTGGTTTAGAGCGGGCAA AATAACTGAATAGTGAAAAAGAAAAATCAACAGCTAACTAAGGCTTTTTTTCTCTTTAGG AGCAAACCTGTGAATATGCAGTAGCCAAGAAGAACCCATAATTCGTCGGCTATGGGAT |
| GenBank Accession | AL952483 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:4638631 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F13B4 |
| Hit Gene Code | At1g13560 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | aminoalcoholphosphotransferase 1 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL952483 [GenBank] |
Gene hit At3g45555
| Sequence (A. th genome BLAST matches underlined) | >15-K104615-0022-343-G02-8409 GAGCATTTACATTGAATATATCCTTTTAATATGTTGCTTTATGCATCATAAATTGTGTTT GGAATGCATGAAACGATATATAGAAGTGAGGCTCCTATGGGATCCTCCCTATAGTGAGAC GTATTACTCACCGCCATAGTGGGGTTTGGAACTTTGAGGTGTTTAATCTGGAGGATTTAT TTCTGAGTTTGCAAAAGGGGGAATGTTGTGAGGTAGGAGAGCAAGTGTTTTCTTATAAGG CATCGTTTCGCGGGATCGGGTGGAGTTGGGATCGAAGGATATCGATAATTAAGTGTTGCT GCCTGGGTTATTAGGGTTGAAGATGTTGTTGTACTAGTGTTGTTGGTAGAGGCGATGAGT CAGAGGGCTTTATTGTTTTGGATGGAAGTATGGAATGGTGGGGGGGTTTGTATAAGATTA TGTTATTGGCAGGTATTATGTAATAGGGTGAAGAGGGGTTTATAGGGCCTGGATTTTGGA GGTTGAGGGGAGTGTTGAGAGTGGAATGGAGATTTTTTGTGGTTTAGGGAGAATGTAAGG TTTAAGGAGTTGGTGGGGCTTTGTATTTATTTCGGTGGTTTGGATGTTTATTGTTGATAA GTAATTGATTGGTGTAGTGGATAAGGATGTAGGGTGGTAATGTGTGGGAGGAATAAAGTT TTTCAGTTTGTTGTGTATAGATTGTGTTTTGG |
| GenBank Accession | FR808366 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:16712916 - go to primer design |
| BLAST e Value | 3e-21 |
| Hit Clone Code (BAC ID) | F9K21 |
| Hit Gene Code | At3g45555 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 146A12 |
Gene hit MHJ24
| Sequence (A. th genome BLAST matches underlined) | >15-K016164-022-343-G02-8409 TATCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATAGAACTCATATTAATCTT CCTCTATTTTTTACGTGTAATATTTATCTATTCACTTGCGTACATTAAGCTATCAATATT GATAATTTGACATGCTAAGTATTCCATTCAGAGGCAAACAACAAGTTCCATGACTTAACT CGGTGGTTTAAAAAATGAACGGCCTCAGACTCACAACCACATAGAAACTGAAAAGGCCAA ACATCAATAAGGGTTTGAGGATAAAACATTTCCTTAAATGTGGTTTGTTATTTTCAAGAG AGTACACTAACATAGTAACAAACAATAGTTTATTTTTCTCGATCAATTATTCTCGTTGTT TTTTTCTCAATTTTTTTACTCTAATTACTAATTAGTTTAGATTTTTGTTTGGAAACCCCT GATTGTTAGAAATATCCCGCAAATTTCGCATAATAGGAAAGCGAAAGAACAAAGAATTCG GAGGTGCATTTAATTTTTTCTTAGTTAGTGTATGAAAGCTAATAAATTTTTCCTAT |
| GenBank Accession | AL952484 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:25647472 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MHJ24 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
