SimpleSearch - Line and FST details


Line specific information

 
Line ID 343G02
Vector Used pAC161
Line Availability available as T3 set from NASC (N432906)
Segregation Analysis 100:100:98
Confirmed for Hit At1g13560
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At1g13560

 
Sequence (A. th genome BLAST matches underlined)
>15-K016155-022-343-G02-8409
TGATCTGTAGATTTCCCGGACTGAAGCCATTTACATTGCTTATCTACTAAAGTAATATGA
GCCATAAGTAAACAAACCTGCTATGGGATCCTCCCTATAGTGAGATTTGCCCAATGCATA
GATCCAAAAACAAGAACATTATACAAAGTTCTACATAACTTCACCTATCCTGATCAAACA
GACAACAATGAATAAGAAGAAGAAATACATCACCGATCCAACTGGTCCATATCGACCATT
CGCAGTGTCAAAGGTTTCTTTTCAAGCTTCTTTACGCGTGATCCTGTGGATTAGAAACCA
GAGATATGTACATTAATTCATTATGCTTTCAAAACAAGAATTTCGATCTTCTTTATCTAA
ATTTTCACCTAAAGCAGTAGATTCCAAGGGCCTCAGTGATCTCATGGATGACTGATGTTG
CAAAGTGCAAGTATAATGACACTGTTTTGCATCAATACAACATTGGTTTAGAGCGGGCAA
AATAACTGAATAGTGAAAAAGAAAAATCAACAGCTAACTAAGGCTTTTTTTCTCTTTAGG
AGCAAACCTGTGAATATGCAGTAGCCAAGAAGAACCCATAATTCGTCGGCTATGGGAT
GenBank Accession AL952483 [GenBank]
Graphic View Graphic view of gene At1g13560
Predicted Position of Insertion Chr1:4638631 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F13B4
Hit Gene Code At1g13560 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation aminoalcoholphosphotransferase 1
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL952483 [GenBank]

Gene hit At3g45555

 
Sequence (A. th genome BLAST matches underlined)
>15-K104615-0022-343-G02-8409
GAGCATTTACATTGAATATATCCTTTTAATATGTTGCTTTATGCATCATAAATTGTGTTT
GGAATGCATGAAACGATATATAGAAGTGAGGCTCCTATGGGATCCTCCCTATAGTGAGAC
GTATTACTCACCGCCATAGTGGGGTTTGGAACTTTGAGGTGTTTAATCTGGAGGATTTAT
TTCTGAGTTTGCAAAAGGGGGAATGTTGTGAGGTAGGAGAGCAAGTGTTTTCTTATAAGG
CATCGTTTCGCGGGATCGGGTGGAGTTGGGATCGAAGGATATCGATAATTAAGTGTTGCT
GCCTGGGTTATTAGGGTTGAAGATGTTGTTGTACTAGTGTTGTTGGTAGAGGCGATGAGT
CAGAGGGCTTTATTGTTTTGGATGGAAGTATGGAATGGTGGGGGGGTTTGTATAAGATTA
TGTTATTGGCAGGTATTATGTAATAGGGTGAAGAGGGGTTTATAGGGCCTGGATTTTGGA
GGTTGAGGGGAGTGTTGAGAGTGGAATGGAGATTTTTTGTGGTTTAGGGAGAATGTAAGG
TTTAAGGAGTTGGTGGGGCTTTGTATTTATTTCGGTGGTTTGGATGTTTATTGTTGATAA
GTAATTGATTGGTGTAGTGGATAAGGATGTAGGGTGGTAATGTGTGGGAGGAATAAAGTT
TTTCAGTTTGTTGTGTATAGATTGTGTTTTGG
GenBank Accession FR808366 [GenBank]
Graphic View Graphic view of gene At3g45555
Predicted Position of Insertion Chr3:16712916 - go to primer design
BLAST e Value 3e-21
Hit Clone Code (BAC ID) F9K21
Hit Gene Code At3g45555 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 146A12

Gene hit MHJ24

 
Sequence (A. th genome BLAST matches underlined)
>15-K016164-022-343-G02-8409
TATCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATAGAACTCATATTAATCTT
CCTCTATTTTTTACGTGTAATATTTATCTATTCACTTGCGTACATTAAGCTATCAATATT
GATAATTTGACATGCTAAGTATTCCATTCAGAGGCAAACAACAAGTTCCATGACTTAACT
CGGTGGTTTAAAAAATGAACGGCCTCAGACTCACAACCACATAGAAACTGAAAAGGCCAA
ACATCAATAAGGGTTTGAGGATAAAACATTTCCTTAAATGTGGTTTGTTATTTTCAAGAG
AGTACACTAACATAGTAACAAACAATAGTTTATTTTTCTCGATCAATTATTCTCGTTGTT
TTTTTCTCAATTTTTTTACTCTAATTACTAATTAGTTTAGATTTTTGTTTGGAAACCCCT
GATTGTTAGAAATATCCCGCAAATTTCGCATAATAGGAAAGCGAAAGAACAAAGAATTCG
GAGGTGCATTTAATTTTTTCTTAGTTAGTGTATGAAAGCTAATAAATTTTTCCTAT
GenBank Accession AL952484 [GenBank]
Graphic View Graphic view of sequence AL952484 of line 343G02
Predicted Position of Insertion Chr5:25647472 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MHJ24
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37