SimpleSearch - Line and FST details
Line specific information
| Line ID | 361C11 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At3g11120
| Sequence (A. th genome BLAST matches underlined) | >83-K016997-022-361-C11-8409 CTATACTTTTGCGACTTTTTAACTAGGAAACGGCCGAGTTGCGCGAGTGGGAGATATTCC TGTACTCGTAGGGCATCGAATGTATCTACCATGATGACTACTCCTGAGATGAGGATTTGC AAGCCCATCATCCCTCACACACGTACGAATCATGCTCTTCCAAACTTTTTATTTTGTATT CGCAGCTATCTGTCCTAATTTTTTTTTTTTGTTTCGCCGGACTAAATTAATACGGAACCT ATGGGTTCTCTCCTATATCGGAGAAATGTTGATGTTCTACTATTCTCTGAATTATAATTT TGAGATTAGATTTGGGTGATTGCTTCAGATGTTGATGATTGGAGGGAATATATAGCTATG GATGCTTTAGAAGTTGATCATAGGAACAAAGTGAATATGCTTGTAGTTGTCTTATTTGAT TCCTGGAATAGAGCCTATGGGATCCTCCCTATAGTGAGATCNTTNNTNACCCTATAAACC ACATACAATGCTTCAAAAAAAAAAAATCGCACCCGGTGCCCTTTCCTAAAGAAAAAAAAC CACAAATAAAAATTTCTAAAACCCACCTTAATAAAAGGGGGCGATCCCAGTTGATCTCCC ACGGCGGGCGAAAAAAACGACACCCCCCCCCGGAAAATAAAAAGGGGAACACTTTTGGAA GAGCCAATTTCACGGGCGTTTTTCTTGACAAACCAACCCCCCCTCACCAGATATCTCGAA AAAACGAACAAACGCCCCAAAAAATATTTATCTATCT |
| GenBank Accession | BX002090 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:3481165 - go to primer design |
| BLAST e Value | 3e-91 |
| Hit Clone Code (BAC ID) | F9F8 |
| Hit Gene Code | At3g11120 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribosomal protein L41 family |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 361A09 |
Gene hit At5g09460
| Sequence (A. th genome BLAST matches underlined) | >83-K016993-022-361-C11-8409 TGATCTGANATTTGCCGGACATGAAGCATTTACATTGAATATATCCATATCAGCTATGGG ATCCTCCCTATAGAGAGATCCACTATTACCACGCCGAAACTGGATACGTCCGAATAGTGT GTGACTCTTCTAGTGACTATGATACCACGTGCATGGTATTCAAAAGAATGGCCAGTGGTT TGCTGACATCATTGCAAGACTGCCGATAAGGCAGACATCCGCCTATGCAGCCATAGCATT GTGAGTCTCAGAAGATGTTTGAGGATTTGATGTTCCCATGTATGAACTTCCCGTCGTGGA TTTTAGCTATGGGATCCTCCNTATAGTGAGATGGGTCTAAACATGTTTGTGTATCATGTT CATGTAATAAACTCGAGTGTTAATAATGGAACCTTCTTTGGCTTCTTACATGCTATGGGA TCCTCCCTATAGTGAGA |
| GenBank Accession | BX002089 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:2944060 - go to primer design |
| BLAST e Value | 2e-40 |
| Hit Clone Code (BAC ID) | T5E8 |
| Hit Gene Code | At5g09460 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | transcription factor bHLH143 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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